YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC23E6.02
Organism:	Schizosaccharomyces pombe
Length:	1040 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC23E6.02.

Description	E-value	Query Range	Subject Range
gi\|71018359, gi\|... - gi\|71018359\|ref\|XP_759410.1\| hypothetical protein UM03263.1 [Ustilago maydis 521], ref\|XP_400878.1\| ...	360.0	[0..2]	[1037..67]
SPAC17A2.12 - ATP-dependent DNA helicase YF2C_SCHPO - Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	351.0	[0..339]	[1039..199]
gi\|42561912 - gi\|42561912\|ref\|NP_172577.2\| SNF2 domain-containing protein / helicase domain-containing protein / z...	350.0	[0..297]	[1035..449]
INO80_EMENI - Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1 INO80_EMENI - Putative DNA helicase ino80 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL ...	339.0	[0..47]	[1018..495]
kis-PA - The gene kismet is referred to in FlyBase by the symbol Dmel\kis (CG3696, FBgn0086902). It is a prot...	337.0	[0..13]	[912..1664]
gi\|66848838, gi\|... - gi\|70992713\|ref\|XP_751205.1\| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus fumigatus Af293],...	331.0	[0..343]	[1035..494]
gi\|169785637 - gi\|169785637\|ref\|XP_001827279.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83776027 - gi\|83776027\|dbj\|BAE66146.1\| unnamed protein product [Aspergillus oryzae]	331.0	[0..387]	[1037..260]
gi\|73991998 - gi\|73991998\|ref\|XP_534421.2\| PREDICTED: similar to chromodomain helicase DNA binding protein 6 isofo...	331.0	[0..43]	[957..101]
gi\|19421557 - gi\|19421557\|gb\|AAK56405.1\| chromodomain helicase DNA binding protein 5 [Homo sapiens]	329.0	[0..43]	[957..101]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNNTAFEQF TLNPCEQIPL DDKHNIGFNK NNTPDYSSSA SSDQLLKNDI NRHEMERRIA  60
   61 FL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.503	a.60.1	SAM/Pointed domain
View	Download	0.335	a.60.6	DNA polymerase beta, N-terminal domain-like
View	Download	0.335	a.60.6	DNA polymerase beta, N-terminal domain-like
View	Download	0.311	a.5.2	UBA-like
View	Download	0.306	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.258	a.140.4	Recombination endonuclease VII, C-terminal and dimerization domains
View	Download	0.241	a.5.2	UBA-like

Predicted Domain #2

Region A:
Residues: [63-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRKQALFNAF MHDSSSSLNT MESNIEKVNG LFPNDNSVIA LKPNEEKLNS SLSVENNDST  60
   61 YTDATLI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.636	a.60.1	SAM/Pointed domain
View	Download	0.463	d.68.3	SirA-like
View	Download	0.435	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.417	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.406	g.18.1	Complement control module/SCR domain
View	Download	0.349	a.4.1	Homeodomain-like
View	Download	0.296	a.64.1	Saposin
View	Download	0.274	d.50.3	PI-Pfui intein middle domain
View	Download	0.269	a.4.1	Homeodomain-like
View	Download	0.254	a.4.1	Homeodomain-like

Predicted Domain #3

Region A:
Residues: [130-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APKIGLDRPN INAITIDVDG HSLQNEISSS TDKLSPSQSD ALFEQKQDSL FWNDNAVIVV  60
   61 SDSESDDNNV RTKSSLNDHD KVNMKEKRNL ELAFMNSKRK KLELPSLPVL STAGPSYTNS 120
  121 LALPPFHHHN NYKMFNTTHT LEDDKFLQGK GTSNNPISLS DEEDNEINFQ NKRYGSDSVI 180
  181 LPGGLLHDSK LPEPGKHLFH LQWYHDRFHN IEGFNLSDSN NQKVQDDQQQ QLEELFKDLD 240
  241 EQLVNDPTIR EGT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [383-1040]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGLIPTLME HQKEGLMWLK RLEESSKKGG ILADDMGLGK TVQALALLVT RPPESKSVKT  60
   61 TLIITPVSLL QQWHNEILTK IAPSHRPTVY IHHGSSKKHK IAEQLMSYDI VLTTYNVIAY 120
  121 EFKNKMAYDK SIEDNAPIKK FEHLPFFEAE WYRVILDEAQ TIKNRNTLAA RGCCLLESTY 180
  181 RWCLSGTPMQ NGVEEFYSLI KFLRIKPYSD WSSFSKDFTI PLSSNINTSA PMKRFRGLLK 240
  241 AVLLRRTKNT KIDGKPILTL PPKTAVKSET DLSSSEMEFY NTLQSGAQIQ MRKYLQEGTI 300
  301 TTHYGSLLVL LLRLRQACCH PWLIVAREAA VDDNDSFQAK NRAIYNQIYP EAVNRLKLIE 360
  361 TLQCSLCMDV VAELLIIVPC GHFLCRECLT HVITSSEDMA KQTSNENISP KCSVCEEYID 420
  421 TERLLSYALF RRYSGMAPIV DADNKLRTEN ISELLPKQYS NILENRQMGM KIFTDPKHWT 480
  481 TSTKIEKALN AVKEIIKKQP TDKILIFSQF VSFLELFTVP FRQEGIKYLM YTGGLSTAER 540
  541 NQALINFEVD PNVRVLLISL KAGNVGLNLT CANHVIILDP FWNPYIEEQA VDRAHRIGQD 600
  601 KPVNILRIVT NNTIEERVLA LQDRKRELID SALGEKGLRE ISRLNTKELS FLFGMSSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1d9zA
Description:	Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits