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Protein Overview: gi|42561912

General Information:
Name(s) found: gi|42561912 [NCBI NR]
Description(s) found:
Found 7 descriptions.
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  • gi|42561912|ref|NP_172577.2| SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKDSVFQS QADDFSGGFE FGADDEDFMI DIEAIYRILD ESPVSMEVSQ EIMSPVGSSV  60
   61 VESGEFRNTL MQSGSQATGW FPYRDLYGLG ASQSEIAEPS SFSDPENGRL GLSATCYSDY 120
  121 GGNVVSFPVN CEDGTVSILD DMRIESKFTP CSPTTMTTYL NNMPGNDSGI GATQNSSLMS 180
  181 HFSPNSSSIV DCASSEPYGH HTMDAPLSEV SPNLVPGYAF QFFPKKEELL NDLKNEFIHC 240
  241 QSDGASRMVF DRHVGFDNGT SERNSGPDVS SERELSLKCE IIPSVSPVCV KPYNSSDGHQ 300
  301 VEKELEQPDN CSSSFQENRA VHMKVKPELA LENTVYSSIP GNYSRCSDVH TVGGTTLPWS 360
  361 GVSNCAISYQ TDVGKEYPFI PPQTAFPGQD IDGRSFYSCF DSDDCFQNVT DPDPETSRTE 420
  421 SLDYLVGDED HEYIKRTCFN LSSFSSGTVE SLSSKRIPER EDDSEIHKIE SYGEFVNPHQ 480
  481 YLPVQRPVFS SEHSTGSQTL NNCGGLKFES NKGNMNFHAD LQDLSQHSSE ASPPDGVLAV 540
  541 SLLRHQRIAL SWMSQKETSG NPCFGGILAD DQGLGKTVST IALILTERST PYLPCEEDSK 600
  601 NGGCNQSDHS QVVFNENKVV EDSLCKMRGR PAAGTLIVCP TSLMRQWADE LRKKVTLEAH 660
  661 LSVLVYHGCS RTKDPHELAK YDVVITTYSL VSKRKHMDCE PVEFLSGPLA QVSWFRVVLD 720
  721 EAQSIKNYKT QASIACSGLH AKRRWCLSGT PIQNSIADLY SYFRFLKYDP YSSYQTFCET 780
  781 IKNPISSYPG EGYKTLQAIL KKVMLRRTKD TLLDGKPVIS LPPKSIELRR VDFTKEERDF 840
  841 YSKLECDSRD QFKEYAEAGT VKQNYVNILL MLLRLRQACG HPLLVSSLSW SSSAEMVKKL 900
  901 PYEKLTFLLH RLEASLAICG ICNVAPKDAV VSLCGHVFCN QCICECLTRD NNQCPLSYCK 960
  961 VGLEISSLFS RETLENAMLD LHKLDAPCDR TTSDPVGSGE PCENLPCGSS KIKAALDILQ1020
 1021 SLSRPQSPAT VMNDVNQSSE NGENNQQLDK SFSLPATPAK SSVGGVVNVA GEKAIVFTQW1080
 1081 TKMLDLLEAG LKSSGIQYRR FDGKMTVPAR DAAVQDFNTL PDVSVMIMSL KAASLGLNMV1140
 1141 AACHVIMLDL WWNPTTEDQA IDRAHRIGQT RPVKVVRFTV KDTVEDRILA LQQKKRKMVA1200
 1201 SAFGEHENGS RESHLSVEDL NYLFMA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] deduced N/A No confident structure predictions are available.
    2 View Details [191..367] deduced N/A No confident structure predictions are available.
    3 View Details [368..525] deduced N/A No confident structure predictions are available.
    4 View Details [526..1055] PSI-BLAST 71.30103 Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA
    5 View Details [1056..1226] PSI-BLAST 34.30103 Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle