YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC342.04
Organism:	Schizosaccharomyces pombe
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC342.04.

Description	E-value	Query Range	Subject Range
gi\|18044661 - gi\|18044661\|gb\|AAH19746.1\| Adrm1 protein [Mus musculus]	350.0	[0..3]	[291..23]
ADRM1_DANRE - Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1	340.0	[0..3]	[285..22]
gi\|47229152 - gi\|47229152\|emb\|CAG03904.1\| unnamed protein product [Tetraodon nigroviridis]	317.0	[0..3]	[289..23]
CG13349-PF, CG13... - This gene is referred to in FlyBase by the symbol Dmel\CG13349 (CG13349, FBgn0033886). It is a prote... gi\|220953386, gi... - gi\|220953386\|gb\|ACL89236.1\| CG13349-PA [synthetic construct], gi\|220943176\|gb\|ACL84131.1\| CG13349-PA...	316.0	[0..4]	[284..18]
gi\|187024004, gi... - gi\|39581033\|emb\|CAE72514.1\| Hypothetical protein CBG19693 [Caenorhabditis briggsae], gi\|187024004\|em... gi\|157758899 - gi\|157758899\|ref\|XP_001671793.1\| Hypothetical protein CBG19693 [Caenorhabditis briggsae AF16]	311.0	[0..3]	[282..18]
gi\|118790164, gi... - gi\|118790164\|ref\|XP_318058.3\| ENSANGP00000010737 [Anopheles gambiae str. PEST], gi\|116122386\|gb\|EAA1...	306.0	[0..3]	[283..22]
gi\|125808994, gi... - gi\|54636121\|gb\|EAL25524.1\| GA12224 [Drosophila pseudoobscura pseudoobscura], gi\|125808994\|ref\|XP_001... gi\|125808994\|ref... - GA12224-PA [Drosophila pseudoobscura], GA12224 [Drosophila pseudoobscura pseudoobscura]	303.0	[0..4]	[284..18]
RPN13_ARATH - 26S proteasome regulatory subunit RPN13 OS=Arabidopsis thaliana GN=RPN13 PE=1 SV=2	299.0	[0..3]	[288..14]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLITFKAGK LRRVPGTKLL RADPEKGYIV MNRDAYGLIH FQWAKRNDLE NPEDDIIVFS  60
   61 SECTFEKVTE CTTGRAYMLK YPSSAHSLFY WMQEASDDND TSYAERINSY IKDQDLLDPA 120
  121 RSDVATVSDM MEVDTVEQSE PIAQPTESSK ESSEIGAPNS D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EINSSEAVRN LLATISAQAG FGGSTVDLCE ILKPSNLTDL LCQEGVIDRL MPYMPPDTPN  60
   61 NLEGVLAIVS SPQYAQALRS FSQALNSPGG VNIISALGLS LDESANPNEG GALQFLKAIA 120
  121 RFVSRNNGSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.562	0.004	molecular_function	d.110.1	Profilin (actin-binding protein)
View	Download	0.310	0.002	molecular_function	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.391	0.001	cytosol	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.296	0.000	molecular_function	a.68.1	Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
View	Download	0.285	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits