| Protein: | srb8 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1233 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srb8.
| Description | E-value | Query Range |
Subject Range |
|
|
625.0 | [0..49] | [551..291] |
|
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608.0 | [0..35] | [558..183] |
|
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413.0 | [0..50] | [550..227] |
|
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400.0 | [0..26] | [551..177] |
|
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387.0 | [0..51] | [551..114] |
|
|
370.0 | [0..27] | [538..2] |
|
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365.0 | [0..99] | [549..203] |
|
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350.0 | [0..29] | [378..2] |
|
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321.0 | [0..36] | [545..126] |
|
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312.0 | [0..30] | [328..8] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MSNRDSANPP GFNDAVPLAI CYIDSSTSSH DEYLTLLQSK VSAPDKNFRD ETVDGAPFLA 60
61 GDAISKGHRY SPPVRSDRAS AQGLLQQHLE KSSTLENLKR YSSTLLGRQN DAVIDEPF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.423 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.349 | a.118.26 | Description not found. |
| View | Download | 0.304 | a.118.8 | TPR-like |
| View | Download | 0.304 | a.118.8 | TPR-like |
| View | Download | 0.255 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.244 | a.1.1 | Globin-like |
| View | Download | 0.216 | c.23.8 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |
| View | Download | 0.212 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.211 | a.118.8 | TPR-like |
|
Region A: Residues: [119-222] |
1 11 21 31 41 51
| | | | | |
1 APFRPPPRVT LSESRRDRWL QGLSDPMVPL SSLIKTIPHG LWGEDILRML VKFRVPFTRA 60
61 IWFIRCAGVN EARSFLRKVQ TTDITEWVKN WTDVAAGFLI SFIS
|
| Detection Method: | |
| Confidence: | 36.508638 |
| Match: | PF09497.1 |
| Description: | No description for PF09497.1 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [223-342] |
1 11 21 31 41 51
| | | | | |
1 SFLNADIYSF ADDYTYLLKL FGRLLAEELV SPKHFLLRIV SFSGDSSLKS FSLHFFALQF 60
61 FSTSLIQYTH ICRKCVITIL QSYQQLIVDQ PANLLKFSLL SKKVSHFLFT LAQKNIESFF 120
121
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [343-552] |
1 11 21 31 41 51
| | | | | |
1 FPTEWDKLKP TIILLWKDFP NYSTLLSIMQ ERNSKAMYMY KPVTSSIRFL QIISCLSFPV 60
61 GWRTLAKDLF KLLPVYTGVP LLLHWCINCR SIFSGDRNFI VSSIFDNANF DRNLIVDLTL 120
121 SFVLKLHPLE YNECVAAAQL LDHLAACGYF FFSKYIARLA SLGYLRESML NSSFMDDQRK 180
181 ILVQLPILRM SQQLKNKIYY ILSKGNYFVD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [553-689] |
1 11 21 31 41 51
| | | | | |
1 WSICDEYVKR FKEDHFSFMF KKEENYAIIT LSLVKIASTP MSKLYEDYLV MLFAFHYSMF 60
61 QVMTKLIADN LVHFSFQSCA CQTLFFICSV VPKTESQKLL LNEMGKLFQV ELNFSYDSPD 120
121 VNLLIEQFYE ITSYESN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.892 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.878 | a.74.1 | Cyclin-like |
| View | Download | 0.820 | a.2.17 | Description not found. |
| View | Download | 0.808 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.774 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.765 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.748 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.737 | a.26.1 | 4-helical cytokines |
| View | Download | 0.706 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.579 | c.55.4 | Translational machinery components |
| View | Download | 0.547 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.538 | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.494 | d.227.1 | OsmC-like |
| View | Download | 0.489 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
|
Region A: Residues: [690-813] |
1 11 21 31 41 51
| | | | | |
1 YDDAFVEYKD ATVANRKDFI EFLFHNITVS SKHTAVIFTS DLLMVLKIAL NHPPYFDDLA 60
61 TTTFSSLLKR DECTILSFFK ILQFYGCKLL SVDQIWAVVS DVYEAQDNNT TLKQFFNYLL 120
121 DEST
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.936 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.879 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.846 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.769 | a.118.8 | TPR-like |
| View | Download | 0.743 | a.118.8 | TPR-like |
| View | Download | 0.738 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.730 | a.118.8 | TPR-like |
| View | Download | 0.681 | a.74.1 | Cyclin-like |
| View | Download | 0.671 | a.118.6 | Protein prenylyltransferase |
| View | Download | 0.638 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.505 | a.1.1 | Globin-like |
| View | Download | 0.354 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.329 | a.74.1 | Cyclin-like |
| View | Download | 0.242 | c.55.4 | Translational machinery components |
|
Region A: Residues: [814-959] |
1 11 21 31 41 51
| | | | | |
1 WPEGYLEERH WRSILCKEAR KHDSGLKLFK LGIKLCTRNE QIMKTIWSFI HVHDCNVISE 60
61 VIPDQRFLRT LTEHFMIDLR QLDIVTCLKK ALVTLDEFSA PLYATWLTTL DDDELSELTD 120
121 DVVQKKVLES LDNYKSGIWK LVLSGL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.578 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.573 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.384 | a.63.1 | Apolipophorin-III |
| View | Download | 0.366 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.365 | a.24.18 | Description not found. |
| View | Download | 0.350 | a.118.26 | Description not found. |
| View | Download | 0.300 | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.289 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.262 | a.118.9 | ENTH/VHS domain |
|
Region A: Residues: [960-1233] |
1 11 21 31 41 51
| | | | | |
1 PNCKTVFEHL LLFSLEERLD LPAAFLQDLI GASAYVMEQV PDSWFLEKLP CPLTQSLQSF 60
61 SHLSNHIEVL DSTRQSRLTF LCHLILHMHG FVELTDQLAT LESLTIRKCI YRNQELLDLL 120
121 LFSIHLVKPN VETNDEVCNT LKAWENIESR PYTIDFPEAL QQYSPRIVLH LFSFFYWKCQ 180
181 HDDYLQENTS SKNNLLQKEW ILITKKKVIL EQCEYVILDI LNFLKFSGIP TQSKKRLEVH 240
241 MLNFISSTLY LKVSFCSSNF LFKTISVLVY DLIT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
