| Protein: | SPAC959.03c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 520 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC959.03c.
| Description | E-value | Query Range |
Subject Range |
|
|
386.0 | [0..15] | [437..742] |
|
|
379.0 | [0..13] | [515..1035] |
|
|
379.0 | [0..13] | [467..1301] |
|
|
376.0 | [0..15] | [429..846] |
|
|
374.0 | [0..11] | [430..285] |
|
Region A: Residues: [1-381] |
1 11 21 31 41 51
| | | | | |
1 MSAQKLNLED VNASTKKYSR GRKLNPKKIK DKKLRSNIQK IEERIENVES SLAKTEILHE 60
61 DNPGLLEAEG LERTYKFRQD QLAPNVALET ATKSFSLDLD KFGGYSFDYT RDGRMILLGG 120
121 RKGHISAFDW RTGKLLTELH LRETVRDVKW FHNHQYFAVA QKKYVYVYDN MGTEIHCLKR 180
181 HIEVNALDFL PYHLLLTSIG NAGYLKYQDV STGQLVAEHR TGMGASHVLH QNPHNAVEHV 240
241 GHANGQVTLW SPSSTTPLVK MLTHRGPVRD LAVNRDGRYM VTAGADSLLK VWDLRTYKEL 300
301 HSYYTPTPAQ RLTLSDRGLL AVGWGPHATI WKDALRTKQN FPYMNHLLPS SSVVDLHYCP 360
361 YEDILGIGHA KGFESIIVPG S
|
| Detection Method: |  |
| Confidence: | 54.154902 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| snoRNA binding | 6.03079504484743 | bayes_pls_golite062009 |
| 3.41022148055944 | bayes_pls_golite062009 | |
| RNA binding | 3.0829625416797 | bayes_pls_golite062009 |
| binding | 1.83286470399158 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25687092973217 | bayes_pls_golite062009 |
| nucleic acid binding | 1.20712373307552 | bayes_pls_golite062009 |
| structural molecule activity | 1.20572493724069 | bayes_pls_golite062009 |
| protein binding | 0.987581964031738 | bayes_pls_golite062009 |
| DNA binding | 0.711274653406079 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.523052412917759 | bayes_pls_golite062009 |
| transcription factor activity | 0.243992994917491 | bayes_pls_golite062009 |
| mRNA binding | 0.0519838181830878 | bayes_pls_golite062009 |
| ligase activity | 0.00971558442368137 | bayes_pls_golite062009 |
|
Region A: Residues: [382-442] |
1 11 21 31 41 51
| | | | | |
1 GEPNYDSYEN DPFASRKQRQ ETEVRQLLEK LRPEMISLNA DFIGNVDRAA PSLRKAEAEE 60
61 E
|
| Detection Method: | |
| Confidence: | 48.30103 |
| Match: | 1erjA |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [443-520] |
1 11 21 31 41 51
| | | | | |
1 KPPEEKWVPK AKARGKNSAL RRYLRKHARN VVDQRRLKVE KSLEIEKKMR AQRVRREQKL 60
61 PEEREKWGYA LSRFVSKK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
