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Protein Overview: SPAC959.03c

General Information:
Name(s) found: SPAC959.03c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • U3 snoRNP-associated protein Utp7 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 520 amino acids

    Gene Ontology:
    Cellular Component: protein complex [RCALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: maturation of SSU-rRNA [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQKLNLED VNASTKKYSR GRKLNPKKIK DKKLRSNIQK IEERIENVES SLAKTEILHE  60
   61 DNPGLLEAEG LERTYKFRQD QLAPNVALET ATKSFSLDLD KFGGYSFDYT RDGRMILLGG 120
  121 RKGHISAFDW RTGKLLTELH LRETVRDVKW FHNHQYFAVA QKKYVYVYDN MGTEIHCLKR 180
  181 HIEVNALDFL PYHLLLTSIG NAGYLKYQDV STGQLVAEHR TGMGASHVLH QNPHNAVEHV 240
  241 GHANGQVTLW SPSSTTPLVK MLTHRGPVRD LAVNRDGRYM VTAGADSLLK VWDLRTYKEL 300
  301 HSYYTPTPAQ RLTLSDRGLL AVGWGPHATI WKDALRTKQN FPYMNHLLPS SSVVDLHYCP 360
  361 YEDILGIGHA KGFESIIVPG SGEPNYDSYE NDPFASRKQR QETEVRQLLE KLRPEMISLN 420
  421 ADFIGNVDRA APSLRKAEAE EEKPPEEKWV PKAKARGKNS ALRRYLRKHA RNVVDQRRLK 480
  481 VEKSLEIEKK MRAQRVRREQ KLPEEREKWG YALSRFVSKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..381] PSI-BLAST 54.154902 PAF-AH Holoenzyme: Lis1/Alfa2
    2 View Details [382..442] PSI-BLAST 48.30103 Tup1, C-terminal domain
    3 View Details [443..520] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • snoRNA binding
    		•  6.03079504484743 bayes_pls_golite062009
    		• 3.41022148055944 bayes_pls_golite062009
  • RNA binding
    		•  3.0829625416797 bayes_pls_golite062009
  • binding
    		•  1.83286470399158 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20572493724069 bayes_pls_golite062009
  • protein binding
    		•  0.987581964031738 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.523052412917759 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
  • mRNA binding
    		•  0.0519838181830878 bayes_pls_golite062009
  • ligase activity
    		•  0.00971558442368137 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle