| Protein: | pku80 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 695 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pku80.
| Description | E-value | Query Range |
Subject Range |
|
|
582.0 | [0..4] | [689..103] |
|
|
581.0 | [0..1] | [689..1] |
|
|
568.0 | [0..2] | [689..5] |
|
|
567.0 | [0..3] | [689..6] |
|
Region A: Residues: [1-558] |
1 11 21 31 41 51
| | | | | |
1 MSDKECTVFV LDLGKDMGTC HHGRSHSDLE WTLSYFHDEL SHKFLANRKT DVVGIVGYKC 60
61 DDTKNDLAEQ EAYWNISVLY PIQTALFSKL QSVSQTLKPS NTMQGDLISA IVVSFDLMAR 120
121 HCKKNKWKKK MIVLTAARGI IDFSDYIGIA EQLLQHDVFL GVYGVDFDQE DINYSEPLKE 180
181 SQKKENEVRI QEFVESCHGQ YCTFQQIYNN IGKPWVRKVR PVAIFRGTFS IGNRDSKDTS 240
241 ISIQVERYPR TRLTKPPTSS AFYENDMSKN YECLNIENSN VENKSMESDA VSTVRSYMVR 300
301 DPKTNDSFEV KREDLESGYS YGRTIVPISR SDEDVLALDT IPGYEILGFI PKSSLPIYYT 360
361 ISDTNIIVPK DDFESKLNFS AFVQSLEREH RYALARFVSK DKGVPVLLVL MPYVEFKRHY 420
421 LVDIQLPFAE DVRPYSFSEF EKLSNEEDMR QIDFAVSNYI DNMDLDSSDC GFNPPFEPEN 480
481 TFSMIPHRLQ QAISYYANSP EGDLPQPNIY LTRYTNPPKS LLDNCILDLK LIKEKLTVNV 540
541 PVKPKYSSQE TAFDTGAP
|
| Detection Method: |  |
| Confidence: | 119.0 |
| Match: | 1jeqB |
| Description: | Ku80 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| double-stranded telomeric DNA binding | 8.64621483095491 | bayes_pls_golite062009 |
| telomeric DNA binding | 5.16364366157397 | bayes_pls_golite062009 |
| binding | 2.55976325410124 | bayes_pls_golite062009 |
| protein binding | 1.4332924081006 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25153438703239 | bayes_pls_golite062009 |
| promoter binding | 1.24066744801055 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.985753648509262 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.814975395718076 | bayes_pls_golite062009 |
| DNA helicase activity | 0.720743494912414 | bayes_pls_golite062009 |
| nucleic acid binding | 0.655463239522058 | bayes_pls_golite062009 |
| transcription activator activity | 0.53035927712834 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.506640285146188 | bayes_pls_golite062009 |
| DNA binding | 0.496246846559375 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.450760554291027 | bayes_pls_golite062009 |
| protein complex binding | 0.31789779419928 | bayes_pls_golite062009 |
| protein C-terminus binding | 0.15516806759612 | bayes_pls_golite062009 |
|
Region A: Residues: [559-695] |
1 11 21 31 41 51
| | | | | |
1 ISEEQIEELL NSGLDEQEGE KLLVLHVSEK DPVGTFTEVL KNPFGLEDAL TEMEKVIKNL 60
61 IDKSKYDLAL QSLQSLRLHS ILEDEVERFN EYLTRLKKDV MQNNKPKENE LINKIRSSGL 120
121 DIILHDELTR HDNFNNI
|
| Detection Method: | |
| Confidence: | 35.0 |
| Match: | 1rw2A |
| Description: | Three-dimensional structure of Ku80 CTD |
Matching Structure (courtesy of the PDB): |
|
