| Protein: | cid16 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1202 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cid16.
| Description | E-value | Query Range |
Subject Range |
|
|
318.0 | [0..801] | [1201..359] |
|
|
308.0 | [0..785] | [1201..333] |
|
|
299.0 | [0..862] | [1200..15] |
|
|
296.0 | [0..454] | [1193..310] |
|
|
294.0 | [0..567] | [1193..534] |
|
|
293.0 | [0..869] | [1200..259] |
|
|
293.0 | [0..885] | [1201..285] |
|
|
288.0 | [0..567] | [1193..421] |
|
|
286.0 | [0..550] | [1193..179] |
|
Region A: Residues: [1-285] |
1 11 21 31 41 51
| | | | | |
1 MLFAKLLLKP VQILFAYAKA KSKEISIKEA NLLIFQDETD NLRKISTPNK LAVSLAGGLK 60
61 ALLSSNQLCH AFHYHNKKIR LVDTSLNNLP VPILLPKLIN YLLARKSQKS AAEWEEIERA 120
121 LLSCCKRSKD PSILFPTDVP CSLDDDVSFL TFKGHKNHLE NRSFFHDSES DNFKVVLSNC 180
181 AINSKEDNNL VTEDRVNLGA KLLLVPVQNL IKLLKVSKIS VDLAVIDHSF QDQKLTLEVG 240
241 NGGLEVVKLF GGWIRILESE CLGHVFSFKK TMKRKEVALV NRKAD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [286-332] |
1 11 21 31 41 51
| | | | | |
1 IDTTDLFIAL RQLVDSKFKS YGIKAQKHAI NRISKLGKMI TSNHAEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [333-424] |
1 11 21 31 41 51
| | | | | |
1 KLTTIPITEA KKESVSNTAL IARKNIIRER KYLSRMFDIF EHIDSYFNHE INMLLVDLLL 60
61 EPLQVAFVYK NLARRWISLE EIENLWLKVF DS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [425-921] |
1 11 21 31 41 51
| | | | | |
1 SHPLGKSITS TLQAIGTRKI LTQLSINMIP RYNQDNCSAG DIYILCFSEN CWLYSVLQKT 60
61 IDHWVNENVE LFYKKFEILK SLLIEDIANS TFSKEVSLNS SLRWYCVAIL VTPLQLIINH 120
121 LKDKTEMLSL DAVMTLILGK NTREVNSSIE ELKITDCLSF LLEHNIFNTF LVYNEGIVKL 180
181 NKDFDDFTPL NLLKCVNYSL MEFQKNSTFD MLEKLYEIGR EIDMSKFSTL KYNLQLPNVD 240
241 LLKESEAVSE TKNTKNNTFI LKSDLKEEER LTNFTIEEIN KHKAIGVALR KLLEEADTSS 300
301 NFSSSNNHVL DSSKHTVSSA STSSRKFIEN YKSLESIGLT SFVKDNKLKA SKELQKLIEE 360
361 NVFPKNLILF IFRKCVIGIK SFEKLQSYVF TYYCERYPKL ILKRVLRFLE EIGFITSQYP 420
421 RKLTDTGALF LKHPSEWGVL QHTFISSNFF ENVPCYISLE QSLQNFQNDI RPDTVRTTAM 480
481 KAIIKKLLKS LRKLEGP
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1epwA |
| Description: | Botulinum neurotoxin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [922-1202] |
1 11 21 31 41 51
| | | | | |
1 VKIACFGSYR TGLMTKNSDL DLVIYSSKEA LLPYYDRVKS IIKNEFSNVM PIRGARIPII 60
61 KFTGQYNIHC DLSFDNLLPI HNSDLILNYS LIDERVKTLL MLVKYWASNR LIDKTHHAFP 120
121 SSYTWCIMVI FYLQQIPEPI LPNLQKLSTQ YSKIVRDNDY GNVNCWFNRD TECYRGSMQK 180
181 GRKNIALLLR GFFCYYGLTT QYSFDWEAYM IDISSSQLKR KSTEFKDCPF VVLDPFLKKK 240
241 NLTKALTQKS VKVVRYELER ACRILSDPKC NLDHLLDPLI Q
|
| Detection Method: | |
| Confidence: | 46.045757 |
| Match: | 1f5aA |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
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