| Protein: | sfc1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 456 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sfc1.
| Description | E-value | Query Range |
Subject Range |
|
|
506.0 | [0..83] | [439..1] |
|
|
423.0 | [0..6] | [401..13] |
|
|
410.0 | [0..2] | [387..38] |
|
|
409.0 | [0..2] | [381..27] |
|
|
395.0 | [0..2] | [379..10] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MNSLKISDNE YALIEHPGFA NNKDAFFQTL GGVQSIQKAC QTSFQNPKQA LLELNLRPKD 60
61 KYHHPVQARV QSRNDLLVTI KKMDNSVQNV SRIRQVFLFR D
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.597 | 0.442 | RNA polymerase III transcription factor activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.473 | 0.262 | RNA polymerase III transcription factor activity | a.4.1 | Homeodomain-like |
| View | Download | 0.467 | 0.035 | RNA polymerase III transcription factor activity | a.74.1 | Cyclin-like |
| View | Download | 0.437 | 0.003 | RNA polymerase III transcription factor activity | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.469 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [102-214] |
1 11 21 31 41 51
| | | | | |
1 MADFQYSTQN SPFVQKLDST LRVLDYNAIN KFSIDLTPVQ RKHVDMPPPP VFSQTSLPMS 60
61 YNFLQNPLVG RVRLPNGKTT IVNLKGQCRV WIITTNMGVE SVPTCRHSKL GEP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [215-301] |
1 11 21 31 41 51
| | | | | |
1 SKTIQEVIEA LKPLFEKRPV WTRRALLNHL DPSYTHYLKF ALPYLSYLWT SGPFRDTYTR 60
61 FGYDPRKDSN AAAYQALFFK LKLNGKH
|
| Detection Method: | |
| Confidence: | 1.06 |
| Match: | 1bbyA |
| Description: | DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.54024488199476 | bayes_pls_golite062009 |
| nucleic acid binding | 4.30331577005505 | bayes_pls_golite062009 |
| transcription factor activity | 3.82269332595313 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 3.35557958497305 | bayes_pls_golite062009 |
| binding | 3.17811844148923 | bayes_pls_golite062009 |
| transcription activator activity | 2.13702350917359 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.12567455635303 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.50332889556988 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| protein binding | 0.626618806841206 | bayes_pls_golite062009 |
|
Region A: Residues: [302-456] |
1 11 21 31 41 51
| | | | | |
1 KGTKTHVFDG KTLFPTNRVY QVCDIVDPTI APLLKDTQLR SECHRDTGWY RSGRYYKVRD 60
61 LMREKLFALI EGEMPSEVAV NMILNAEEVE ESDRYSNFDE QDNTDLNDTV RGLNTSATDD 120
121 RINDLMRNLM KRSQEHEGFE DLEEIDDDYD DIFGD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
