| Protein: | ndc80 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 624 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ndc80.
| Description | E-value | Query Range |
Subject Range |
|
|
191.0 | [0..96] | [624..992] |
|
|
188.0 | [0..96] | [624..994] |
|
|
188.0 | [0..97] | [624..995] |
|
|
187.0 | [0..84] | [624..981] |
|
|
186.0 | [0..84] | [624..982] |
|
|
186.0 | [0..97] | [624..1096] |
|
|
186.0 | [0..84] | [624..981] |
|
Region A: Residues: [1-388] |
1 11 21 31 41 51
| | | | | |
1 MQDSSSYARR YSQAPSSSNL RTTTFGFNGL GTSRTSLAPQ RTLVNARQSI DPDGLSSRVL 60
61 TPTMRPSLAP NTRRSSVRVS NASFISQTPN ITSIKDPRPL SDRRYQQECA TQVVNYLLES 120
121 GFSQPLGLNN RFMPSTREFA AIFKHLYNKL DPNFRFGARY EEDVTTCLKA LNYPFLDSIS 180
181 RSRLVAIGSP HVWPAILGML HWVVSLIQCT EKAVAMVYTV EQNSLDDHLV DKVLFDYLVR 240
241 TYHLYLDESP EESEPEKELK ATFNQQNQDL YNQTEALKST NEELINQIKS AEELDSAIQV 300
301 LEERYRTMQR DEVKFQSAMS GMKSKMESRT NLMKQLQVNI EEKESQLQLL KEKRDSLKYQ 360
361 VENQDISISE FEKMVSEREQ LDRNLNMI
|
| Detection Method: |  |
| Confidence: | 18.30103 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [389-466] |
1 11 21 31 41 51
| | | | | |
1 GSKISELRKE VFDTDLLIQA SIDSLEKKVQ KFNSLAYRIG IVPIAAIRSA NNDFELEINP 60
61 EGPNYINLDL KNKVRPFI
|
| Detection Method: | |
| Confidence: | 10.30103 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [467-624] |
1 11 21 31 41 51
| | | | | |
1 NEVRRSITLE FHEEQNKSLK LQEHVDTVND LIAELQDELR GIESRLTSVL SECNMLRETA 60
61 SEEKNAFDAE SDKLERELQQ LKLSSHNSML QLDQRIQSIN IEADQIAHAC MEYKNNIYKE 120
121 VAFVLGEIIH FKLHVQDSLE DLKMDYQKEL DDLSRSEL
|
| Detection Method: | |
| Confidence: | 6.39794 |
| Match: | 2iw5A |
| Description: | No description for 2iw5A was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 3.3573497204506 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| DNA binding | 3.0205295442286 | bayes_pls_golite062009 |
| nucleic acid binding | 2.77547609431902 | bayes_pls_golite062009 |
| transcription factor activity | 2.57014522504183 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.1457670954804 | bayes_pls_golite062009 |
| chromatin binding | 1.68308196781423 | bayes_pls_golite062009 |
| actin binding | 1.48871115327078 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.41102023549536 | bayes_pls_golite062009 |
| centromeric DNA binding | 1.13545283098583 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06075239560835 | bayes_pls_golite062009 |
| transcription repressor activity | 0.86319868225781 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription activator activity | 0.68518521953823 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.526073636025138 | bayes_pls_golite062009 |
| transcription factor binding | 0.45727836611098 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.284650049512347 | bayes_pls_golite062009 |
| actin filament binding | 0.26311995282891 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.08523661344413 | bayes_pls_golite062009 |
| histone binding | 0.0391625783266718 | bayes_pls_golite062009 |
