YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3D6.12
Organism:	Schizosaccharomyces pombe
Length:	922 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3D6.12.

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	773.0	[0..17]	[852..730]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	665.0	[0..16]	[655..1164]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	641.0	[0..25]	[657..865]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	638.0	[0..15]	[655..1035]
gi\|118397021 - gi\|118397021\|ref\|XP_001030846.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila] gi\|118397021, gi... - gi\|89285162\|gb\|EAR83183.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila SB210], gi\|...	618.0	[0..8]	[872..1692]
gi\|73670327, gi\|... - gi\|73670327\|ref\|YP_306342.1\| WD-40 repeat-containing protein [Methanosarcina barkeri str. Fusaro], g...	610.0	[0..23]	[726..547]
gi\|110168368, gi... - gi\|71673858\|ref\|ZP_00671606.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	609.0	[0..16]	[690..837]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSYTRYEP TEFFGVIASS GCNILGQPSS SAKSVGRAIV GGLESVLEWD LKTGQLLSKW  60
   61 KDSDCSAKVT CIANFDEMYA VGYADGSIRL WKDGELLITL NGHKSAVTTM DFDKMGTRLA 120
  121 SGSMDTDIIV WDIVAETGLF RLRGHKDQIT KLLFITPPSK NTAEETVVDT DIDSGDMDVD 180
  181 SKSSDSFLLS VGKDSFMKLW DLSIQHCVET HVDHQGEIWA MCVSPDAKRC LTAGTGSDVK 240
  241 VWEISFPDDN NFTPTTKAFQ QLGTFTRQSR DRPITLAYDV SNRYVVFQAH DRLLEVFRLR 300
  301 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.09691
Match:	1trjA
Description:	Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [302-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAELEKILNR RRRRKKSEDV SITLKDEYEP FALIRTTARA SSVAWIPGNR TPTLVTSLQN  60
   61 NSIEVYALDV KSEGSAAPLT ERASRISAIE IPGHRADVRT LALSANHDVI LSGANGSLKL 120
  121 WNKKTTSCIR TIECGYVLAA SFINN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #3

Region A:
Residues: [447-805]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKCIVSAYKS GELEVYDIAS SSLIERIQAH DGAIWDLAVG HDGTYFATAS ADHTVKLWSL  60
   61 KSSFDFVPGT TRKVTTLKLE QTRQIDFTDD VLAVKISPDG RFVAASLLDN TVKVYYLDSL 120
  121 KFFLNLYGHK LPVLSMDISY DSKLLVTCSA DKNVKIWGLD FGDCHKSIFA HQDSIMEVTF 180
  181 QPDTYNFFTC SKDREVRYWD GKSFDLILKL RGHHSEVWAL AVGPTFVVSG SHDHSIRLWE 240
  241 QGDDLVFLEE ERERELEEQY ESTLVSSYEN AEADGEVKDG DVAAVTKQTI ESLKDGEKIL 300
  301 EAITIGIEDL DQEIQYRLDL LKSPGKARGP RNPILAHLGV SAEEYVLNTF KKIRSSHLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.09691
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #4

Region A:
Residues: [806-922]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALLVLPFEH VLSLFRFIDI WASRKWSIPL VSRIIFFLLR TYHRQLTTTV KMRPLLNNIR  60
   61 SSLRGSLQEE RSLIGYNAAG LSYLRHEWEL THNTSLEDID STSLEVDGKK RAFSNIV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits