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Protein Overview: SPBC3D6.12

General Information:
Name(s) found: SPBC3D6.12 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U3 snoRNA associted protein Dip2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 922 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    small-subunit processome [IEA]
    cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: maturation of SSU-rRNA [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSYTRYEP TEFFGVIASS GCNILGQPSS SAKSVGRAIV GGLESVLEWD LKTGQLLSKW  60
   61 KDSDCSAKVT CIANFDEMYA VGYADGSIRL WKDGELLITL NGHKSAVTTM DFDKMGTRLA 120
  121 SGSMDTDIIV WDIVAETGLF RLRGHKDQIT KLLFITPPSK NTAEETVVDT DIDSGDMDVD 180
  181 SKSSDSFLLS VGKDSFMKLW DLSIQHCVET HVDHQGEIWA MCVSPDAKRC LTAGTGSDVK 240
  241 VWEISFPDDN NFTPTTKAFQ QLGTFTRQSR DRPITLAYDV SNRYVVFQAH DRLLEVFRLR 300
  301 SSAELEKILN RRRRRKKSED VSITLKDEYE PFALIRTTAR ASSVAWIPGN RTPTLVTSLQ 360
  361 NNSIEVYALD VKSEGSAAPL TERASRISAI EIPGHRADVR TLALSANHDV ILSGANGSLK 420
  421 LWNKKTTSCI RTIECGYVLA ASFINNDKCI VSAYKSGELE VYDIASSSLI ERIQAHDGAI 480
  481 WDLAVGHDGT YFATASADHT VKLWSLKSSF DFVPGTTRKV TTLKLEQTRQ IDFTDDVLAV 540
  541 KISPDGRFVA ASLLDNTVKV YYLDSLKFFL NLYGHKLPVL SMDISYDSKL LVTCSADKNV 600
  601 KIWGLDFGDC HKSIFAHQDS IMEVTFQPDT YNFFTCSKDR EVRYWDGKSF DLILKLRGHH 660
  661 SEVWALAVGP TFVVSGSHDH SIRLWEQGDD LVFLEEERER ELEEQYESTL VSSYENAEAD 720
  721 GEVKDGDVAA VTKQTIESLK DGEKILEAIT IGIEDLDQEI QYRLDLLKSP GKARGPRNPI 780
  781 LAHLGVSAEE YVLNTFKKIR SSHLDDALLV LPFEHVLSLF RFIDIWASRK WSIPLVSRII 840
  841 FFLLRTYHRQ LTTTVKMRPL LNNIRSSLRG SLQEERSLIG YNAAGLSYLR HEWELTHNTS 900
  901 LEDIDSTSLE VDGKKRAFSN IV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] PSI-BLAST 52.09691 Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
    2 View Details [302..446] PSI-BLAST 72.69897 No description for 2gnqA was found.
    3 View Details [447..805] PSI-BLAST 67.09691 No description for 2ovpB was found.
    4 View Details [806..922] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle