YRC Public Data Repository - Protein Structure Prediction

Protein:	taf9
Organism:	Schizosaccharomyces pombe
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf9.

Description	E-value	Query Range	Subject Range
gi\|68490007, gi\|... - gi\|68490007\|ref\|XP_711163.1\| hypothetical protein CaO19.1111 [Candida albicans SC5314], gi\|46432443\|... orf19.1111 - orf19.1111 CGDID:CAL0001873 Assembly 19, Contig19-10093 (14265, 14963) CDS, translated using codon t...	203.0	[0..14]	[155..80]
gi\|42733663 - gi\|42733663\|gb\|AAS38620.1\| similar to F55B11.3.p [Caenorhabditis elegans] [Dictyostelium discoideum]	202.0	[0..6]	[141..205]
gi\|60473386, gi\|... - gi\|66823581\|ref\|XP_645145.1\| transcription initiation factor TFIID subunit [Dictyostelium discoideum... gi\|60473386 - gi\|60473386\|gb\|EAL71332.1\| transcription initiation factor TFIID subunit [Dictyostelium discoideum]	201.0	[0..6]	[141..205]
gi\|108877370, gi... - gi\|157167250\|ref\|XP_001652244.1\| tbp-associated factor [Aedes aegypti], gi\|108877370\|gb\|EAT41595.1\| ...	201.0	[0..14]	[151..27]
gi\|27819943 - gi\|27819943\|gb\|AAL28886.2\| LD26511p [Drosophila melanogaster]	198.0	[0..14]	[147..15]
AGAP003094-PA - transcription initiation factor TFIID subunit 9B\|protein_coding\|2R:32416914:32417898:-1\|gene:AGAP003... gi\|118783136, gi... - gi\|118783136\|ref\|XP_312783.3\| ENSANGP00000020370 [Anopheles gambiae str. PEST], gi\|116129068\|gb\|EAA0...	198.0	[0..14]	[147..24]
TAF9_YEAST - Transcription initiation factor TFIID subunit 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... gi\|151945941 - gi\|151945941\|gb\|EDN64173.1\| TFIID subunit [Saccharomyces cerevisiae YJM789] TAF9 - Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation... gi\|190408463 - gi\|190408463\|gb\|EDV11728.1\| transcription initiation factor TFIID subunit 9 [Saccharomyces cerevisia...	194.0	[0..1]	[134..17]
gi\|44985120 - gi\|44985120\|gb\|AAS53898.1\| AFR527Wp [Ashbya gossypii ATCC 10895] gi\|45199045, gi\|... - gi\|45199045\|ref\|NP_986074.1\| AFR527Wp [Ashbya gossypii ATCC 10895], gi\|44985120\|gb\|AAS53898.1\| AFR52...	194.0	[0..12]	[139..6]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPGISDES IKGPKDVRLI HLILSSLGVP SYSQTVPLQL LTFAHRYTQQ LIQDSQVYAE  60
   61 HSRGQNAPIS VEDVRLAVAS QINHSFTGPP PKEFLLELAM ERNRKPLPQI QPSYGFRLPP 120
  121 EKYCLTQPNW IVSNETQQNQ PKEENSSDSR MEEDKLDFSV KSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1tafA
Description:	TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
general RNA polymerase II transcription factor activity	9.25279783093877	bayes_pls_golite062009
lysine N-acetyltransferase activity	5.97252613675094	bayes_pls_golite062009
histone acetyltransferase activity	5.97252613675094	bayes_pls_golite062009
N-acetyltransferase activity	4.49886535711761	bayes_pls_golite062009
DNA binding	4.24625687315724	bayes_pls_golite062009
N-acyltransferase activity	4.22222466548509	bayes_pls_golite062009
transcription regulator activity	4.08606081850613	bayes_pls_golite062009
transcription initiation factor activity	3.96621818094279	bayes_pls_golite062009
nucleic acid binding	3.93473976418251	bayes_pls_golite062009
acetyltransferase activity	3.91614625961398	bayes_pls_golite062009
binding	3.79827182235984	bayes_pls_golite062009
acyltransferase activity	3.38611688546892	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	3.35015681315177	bayes_pls_golite062009
RNA polymerase II transcription factor activity	3.28941584139552	bayes_pls_golite062009
transferase activity, transferring acyl groups	3.1782337747057	bayes_pls_golite062009
transcription factor activity	2.31114764804139	bayes_pls_golite062009
protein binding	1.2861218811362	bayes_pls_golite062009
transcription activator activity	1.25487495162413	bayes_pls_golite062009
transcription factor binding	1.15204005455906	bayes_pls_golite062009
transcription coactivator activity	1.1297723528047	bayes_pls_golite062009
nucleotidyltransferase activity	1.10331930589736	bayes_pls_golite062009
centromeric DNA binding	1.03586371237592	bayes_pls_golite062009
transcription cofactor activity	1.01502031330902	bayes_pls_golite062009
transcription repressor activity	0.72554769377984	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.437760073242714	bayes_pls_golite062009
histone binding	0.218942897869955	bayes_pls_golite062009
transferase activity	0.106182831892296	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: