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View Structure Prediction Details

Protein: cct1
Organism: Schizosaccharomyces pombe
Length: 556 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cct1.

Description E-value Query
Range		 Subject
Range
gi|18978346, gi|... - gi|18978346|ref|NP_579703.1| thermosome, single subunit [Pyrococcus furiosus DSM 3638], gi|18894178|...
 538.0 [0..2] [544..4]
THSB_THEK1 - Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2
THSB_THEK1 - Thermosome subunit beta OS=Thermococcus sp. (strain JCM 11816 / KS-1) GN=thsB PE=3 SV=2
 537.0 [0..2] [555..4]
THSB_PYRKO - Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1
THSB_THEKO - Thermosome subunit beta OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=ths...
gi|473965, gi|21... - gi|473965|dbj|BAA06143.1| heat-shock protein [Pyrococcus sp.], pir||S61294 heat-shock protein - Pyro...
 537.0 [0..2] [555..4]
THS_PYRAB - Thermosome subunit OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ths PE=3 SV=1
THS_PYRAB - Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1
 534.0 [0..2] [544..4]
gi|2129425 - gi|2129425|pir||JC4270 hyperthermophilic heat shock protein - Desulfurococcus mobilis
gi|1168091 - gi|1168091|gb|AAB35235.1| hyperthermophilic heat shock protein; HHSP [Desulfurococcus]
THS_DESSY - Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1
 533.0 [0..2] [554..4]
THS_PYRHO - Thermosome subunit OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139...
THS_PYRHO - Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1
 531.0 [0..2] [542..4]
THSB_ARCFU - Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1
THSB_ARCFU - Thermosome subunit beta OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 /...
 530.0 [0..2] [543..4]
gi|30908966 - gi|30908966|gb|AAP37564.1| thermosome alpha subunit [Thermococcus litoralis]
 530.0 [0..2] [542..4]
gi|62087344 - gi|62087344|dbj|BAD92119.1| chaperonin containing TCP1, subunit 3 (gamma) variant [Homo sapiens]
 530.0 [0..1] [555..33]
CH60_GEOKA - 60 kDa chaperonin OS=Geobacillus kaustophilus GN=groL PE=3 SV=1
CH60_GEOKA - 60 kDa chaperonin OS=Geobacillus kaustophilus (strain HTA426) GN=groL PE=3 SV=1
 529.0 [0..12] [555..1]

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Predicted Domain #1
Region A:
Residues: [1-556] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQAPRESTL FLSGEKISGE DVRNQNVLAT TAIANVVKSS LGPVGLDKML VDDIGDVTVT  60
   61 NDGATILSLL DVEHPAGKVL VELAQQQDKE VGDGTTSVVI IAAELLRRAN ELVKNKIHPT 120
  121 TIITGYRLAI REAVKFMTDV LSCSVDSLGK ESLINVAKTS MSSKIIGNDS DFFSTMAVDA 180
  181 MLSVKTSNSK GETRYPVKAV NILKAHGKSS RESVLVKGYA LNCTIASQAM KTRVQNAKIA 240
  241 VLDMDLQKTK MALGVHVTID DPDQLEKIRE REVMITLERV KKILNAGANV ILTTKGIDDL 300
  301 CLKSIIEAGA MAVRRCKKED LRRIAKASGA TLLSSLSNLE GEETFESSYL GSAEEVVQEK 360
  361 FSDDECILVK GTKAYSSASI VLRGPNEYSL DEMERSMHDS LSVVKRTLES GKVVPGGGAV 420
  421 ETALSIYLEN FATSLGSREQ LAIAEFAQAL LIIPRTLAVN AAKDSTELTA KLRAYHAASQ 480
  481 NAEVTDVKKR GYKNYGLDLL NGVIRDNVKA GVLEPSMSKL KSLKSAVEAC IAILRIDTSI 540
  541 KLDPERQPED PHAGLH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 148.0
Match: 1q3rA
Description: Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form of single mutant)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
unfolded protein binding 7.60116801069598 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.6934849790316 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.40373598585301 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.28982639907979 bayes_pls_golite062009
binding 2.07154556649829 bayes_pls_golite062009
nucleic acid binding 1.67284737458957 bayes_pls_golite062009
DNA binding 1.60256620441721 bayes_pls_golite062009
transporter activity 1.27879339110564 bayes_pls_golite062009
transmembrane transporter activity 1.08697283907212 bayes_pls_golite062009
chaperone binding 0.91200031047441 bayes_pls_golite062009
substrate-specific transporter activity 0.828920415160435 bayes_pls_golite062009
ATPase activity, coupled 0.787685249362834 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.75018875403424 bayes_pls_golite062009
pyrophosphatase activity 0.69634667457441 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.682843768728088 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.680378643689288 bayes_pls_golite062009
protein binding 0.634982583867058 bayes_pls_golite062009
ATPase activity 0.584574936611857 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.573106450426516 bayes_pls_golite062009
catalytic activity 0.424959044318554 bayes_pls_golite062009
ion transmembrane transporter activity 0.280310103153739 bayes_pls_golite062009
active transmembrane transporter activity 0.275534581026027 bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism 0.26275673855778 bayes_pls_golite062009
primary active transmembrane transporter activity 0.252704226951294 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.243984617084631 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.205808843369749 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.202279803135899 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.20198255686005 bayes_pls_golite062009
cation transmembrane transporter activity 0.0778814959589007 bayes_pls_golite062009
hydrolase activity 0.0491351110520448 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle