YRC Public Data Repository - Protein Structure Prediction

Protein:	mrp2
Organism:	Schizosaccharomyces pombe
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrp2.

Description	E-value	Query Range	Subject Range
gi\|238013616, gi... - gi\|4803710\|emb\|CAB42658.1\| iron sulfur subunit of succinate dehydrogenase (truncated) and ribosomal ...	140.0	[0..5]	[105..248]
gi\|28611030 - gi\|28611030\|emb\|CAD62368.1\| chimeric SDH2-RPS14 protein [Triticum aestivum]	138.0	[0..6]	[105..267]
RR14_MESVI - 30S ribosomal protein S14, chloroplastic OS=Mesostigma viride GN=rps14 PE=3 SV=1	135.0	[0..7]	[105..3]
gi\|5688945, gi\|2... - gi\|5688950\|dbj\|BAA82751.1\| mitochondrial ribosomal portein S14 [Oryza sativa Japonica Group], gi\|568...	134.0	[0..5]	[105..250]
RS14_MARHV - 30S ribosomal protein S14 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	133.0	[0..9]	[105..5]
gi\|86161752, gi\|... - gi\|87122984\|ref\|ZP_01078845.1\| 30S ribosomal subunit protein S14 [Marinomonas sp. MED121], gi\|861617...	133.0	[0..9]	[105..5]
RS14_CHRSD - 30S ribosomal protein S14 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	132.0	[0..7]	[105..3]
RS14_BORPA - 30S ribosomal protein S14 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=... RS14_BORBR - 30S ribosomal protein S14 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=... RS14_BORPE - 30S ribosomal protein S14 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=r... RS14_BORBR - 30S ribosomal protein S14 OS=Bordetella bronchiseptica GN=rpsN PE=3 SV=1 RS14_BORPA - 30S ribosomal protein S14 OS=Bordetella parapertussis GN=rpsN PE=3 SV=1 RS14_BORPE - 30S ribosomal protein S14 OS=Bordetella pertussis GN=rpsN PE=3 SV=1	132.0	[0..9]	[105..5]
RS14_DECAR - 30S ribosomal protein S14 OS=Dechloromonas aromatica (strain RCB) GN=rpsN PE=3 SV=1	131.0	[0..9]	[105..5]
gi\|90417582\|ref\|... - 30S ribosomal protein S14 [marine gamma proteobacterium HTCC2207] gi\|90417582, gi\|... - gi\|90417582\|ref\|ZP_01225500.1\| 30S ribosomal protein S14 [marine gamma proteobacterium HTCC2207], gi...	130.0	[0..7]	[105..3]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALGHLKHK AFRDLLCRRL FAEHEVERQS NLYIYRNPEL PLRVRLEAKK RIEALPTNAH  60
   61 PTKIKNRCIE TGRGRGVFRA FGLARFPFRL KALANKLPGV RKASW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1vs5N
Description:	No description for 1vs5N was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	6.46626105355287	bayes_pls_golite062009
structural molecule activity	5.9950507001335	bayes_pls_golite062009
binding	2.38688645545392	bayes_pls_golite062009
transcription regulator activity	2.06638295156835	bayes_pls_golite062009
nucleic acid binding	1.86905163192306	bayes_pls_golite062009
DNA binding	1.86136246408845	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.85717131429984	bayes_pls_golite062009
protein binding	1.60194768638501	bayes_pls_golite062009
transcription factor activity	1.28200214216555	bayes_pls_golite062009
transcription factor binding	1.02376991656046	bayes_pls_golite062009
sequence-specific DNA binding	0.48169971060149	bayes_pls_golite062009
transcription activator activity	0.42927665410421	bayes_pls_golite062009
cytoskeletal protein binding	0.405267736307896	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.33193976709857	bayes_pls_golite062009
transcription cofactor activity	0.29526103320546	bayes_pls_golite062009
ligand-dependent nuclear receptor activity	0.27479486808555	bayes_pls_golite062009
catalytic activity	0.101795606736461	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: