| Protein: | rec8 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 561 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rec8.
| Description | E-value | Query Range |
Subject Range |
|
|
441.0 | [0..1] | [557..1] |
|
|
435.0 | [0..1] | [557..1] |
|
|
435.0 | [0..1] | [557..1] |
|
|
434.0 | [0..1] | [557..1] |
|
|
433.0 | [0..1] | [557..1] |
|
|
432.0 | [0..1] | [558..1] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MFYNQDVLTK EKGGMGVIWL AATLGSKHSL RKLHKKDIMS VDIDEACDFV AFSPEPLALR 60
61 LSSNLMIGVT RVWAHQYSFF HSQVSTLHLR VRKELDHFTS KPFKNIDIQN EQTNPKQLLL 120
121 AEDPA
|
| Detection Method: |  |
| Confidence: | 57.958607 |
| Match: | PF04825.4 |
| Description: | No description for PF04825.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [126-199] |
1 11 21 31 41 51
| | | | | |
1 FIPEVSLYDA FNLPSVDLHV DMSSFTQPKE NPNISVLETL PDSTSYLINT SQNYSLRNNV 60
61 SSFVYEDSRA FSTE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [200-414] |
1 11 21 31 41 51
| | | | | |
1 EPLDFEFDEN GDIQELTKGT INSDPSLQAA SQHSNLGSVQ REYNSEEQES RIHMFEIDED 60
61 VLPLPVPLQS VMDSEHNENE PRALKRRKVQ KLLEPDENIE LSTRTLSQWR KNYVERMIAL 120
121 EATKYVRRRG ASSAKKKELN KFFDWESFHP LLKPWIEKLK PSNNTPSEID DVLRNIDTSE 180
181 VEVGRDVQGE LGLNIPWNTS SRSNSAINSK SHSQT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [415-561] |
1 11 21 31 41 51
| | | | | |
1 GSEHSTPLLD TKYRKRLPHS PSMPSRVEFL PALESSQFHE TLNSELSLQL SDDFVLYKNT 60
61 QEENAHLMLS MEKECANFYE YAKTAIYENN GRITFSSLLP NDLKRPVVAQ AFSHLLSLAT 120
121 KSAFLVKQDK PYSEISVSLN LKSTDAI
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.74762577068811 | bayes_pls_golite062009 |
| DNA binding | 3.6691593040775 | bayes_pls_golite062009 |
| nucleic acid binding | 3.56696430931691 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| transcription factor activity | 2.86565145658031 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.56454590328755 | bayes_pls_golite062009 |
| transcription activator activity | 1.36544833032097 | bayes_pls_golite062009 |
| transcription repressor activity | 1.22911517186886 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.913018999939773 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.71350728967175 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.697234220778482 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| DNA helicase activity | 0.300899564141452 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
