| Protein: | map1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 398 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for map1.
| Description | E-value | Query Range |
Subject Range |
|
|
260.0 | [0..18] | [393..1] |
|
|
248.0 | [0..14] | [393..2] |
|
|
248.0 | [0..18] | [393..1] |
|
|
248.0 | [0..18] | [393..1] |
|
|
247.0 | [0..18] | [393..1] |
|
|
246.0 | [0..18] | [393..1] |
|
|
244.0 | [0..18] | [393..1] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MMDERKLSNF QIDGEKAYTG SSQGNSYLED RQKRQNTFTK RKAGIFKKAN ELALLTGSEV 60
61 MVLVVSETGL VHTFSTPKLE NVVKSPEGQK LITESL
|
| Detection Method: |  |
| Confidence: | 22.045757 |
| Match: | 1mnmA |
| Description: | MCM1 transcriptional regulator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.47820295830817 | bayes_pls_golite062009 |
| DNA binding | 4.34885522982729 | bayes_pls_golite062009 |
| nucleic acid binding | 4.22473647889076 | bayes_pls_golite062009 |
| binding | 3.73009730829487 | bayes_pls_golite062009 |
| transcription factor activity | 3.68208249443337 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.65616273505159 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.72567983955215 | bayes_pls_golite062009 |
| transcription activator activity | 1.38059870614713 | bayes_pls_golite062009 |
| protein binding | 1.27646601063623 | bayes_pls_golite062009 |
| DNA bending activity | 0.167327205417291 | bayes_pls_golite062009 |
|
Region A: Residues: [97-204] |
1 11 21 31 41 51
| | | | | |
1 INATTDQNES QASQAKQSSA QLSDSESGYP LDHEEMRISE ENGPSHIENL NFFSDIDNFS 60
61 KTSAEEIASK LFSSVSPTHE TLQFDHGLQN LEGFQANEHP EMFADHSI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [205-398] |
1 11 21 31 41 51
| | | | | |
1 DFYNSNNVDI PALSMLTSQT SSSSTLNLPP EPASREVKIF PKQGKRIFSP STGIDYETTG 60
61 QHSVNSPPST YKHRRSLNKS FATRSEPQTP RKNKIRDSLQ SSPLNFPPRD RPPLIPISRI 120
121 AVPSTIETEE RQYRGNQKII NFYAKIFEPN SGLGTSSEGA SSSFPDVDPN LAQNGVPYYS 180
181 LPDIDHNQFD HLRR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
