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Protein Overview: map1

General Information:
Name(s) found: map1 / SPAC11E3.06 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • MADS-box transcription factor Map1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ICLink to PubMed article][IDALink to PubMed article]
    Biological Process: regulation of transcription, mating-type specific [IMPLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [TASLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDERKLSNF QIDGEKAYTG SSQGNSYLED RQKRQNTFTK RKAGIFKKAN ELALLTGSEV  60
   61 MVLVVSETGL VHTFSTPKLE NVVKSPEGQK LITESLINAT TDQNESQASQ AKQSSAQLSD 120
  121 SESGYPLDHE EMRISEENGP SHIENLNFFS DIDNFSKTSA EEIASKLFSS VSPTHETLQF 180
  181 DHGLQNLEGF QANEHPEMFA DHSIDFYNSN NVDIPALSML TSQTSSSSTL NLPPEPASRE 240
  241 VKIFPKQGKR IFSPSTGIDY ETTGQHSVNS PPSTYKHRRS LNKSFATRSE PQTPRKNKIR 300
  301 DSLQSSPLNF PPRDRPPLIP ISRIAVPSTI ETEERQYRGN QKIINFYAKI FEPNSGLGTS 360
  361 SEGASSSFPD VDPNLAQNGV PYYSLPDIDH NQFDHLRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] PSI-BLAST 22.045757 MCM1 transcriptional regulator
    2 View Details [97..204] MSA 2.573996 View MSA. No confident structure predictions are available.
    3 View Details [205..398] MSA 15.502997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.47820295830817 bayes_pls_golite062009
  • DNA binding
    		•  4.34885522982729 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.22473647889076 bayes_pls_golite062009
  • binding
    		•  3.73009730829487 bayes_pls_golite062009
  • transcription factor activity
    		•  3.68208249443337 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.65616273505159 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.72567983955215 bayes_pls_golite062009
  • transcription activator activity
    		•  1.38059870614713 bayes_pls_golite062009
  • protein binding
    		•  1.27646601063623 bayes_pls_golite062009
  • DNA bending activity
    		•  0.167327205417291 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle