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View Structure Prediction Details

Protein: SPCC1672.03c
Organism: Schizosaccharomyces pombe
Length: 527 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1672.03c.

Description E-value Query
Range		 Subject
Range
URE1_CLOTH - Urease subunit alpha OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB...
 270.0 [0..2] [503..66]
URE1_NOSS1 - Urease subunit alpha OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ureC PE=3 SV=1
gi|25290150 - pir||AG2264 urease alpha chain [imported] - Nostoc sp. (strain PCC 7120)
 260.0 [0..2] [503..65]
URE1_ANAVT - Urease subunit alpha OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ureC PE=3 SV=1
 258.0 [0..2] [503..65]
URE1_BACHD - Urease subunit alpha OS=Bacillus halodurans GN=ureC PE=3 SV=1
URE1_BACHD - Urease subunit alpha OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 ...
 258.0 [0..2] [503..64]
gi|53687606 - gi|53687606|ref|ZP_00107943.2| COG0804: Urea amidohydrolase (urease) alpha subunit [Nostoc punctifor...
 255.0 [0..2] [503..61]
gi|86607525 - gi|86607525|ref|YP_476287.1| urease, alpha subunit [Cyanobacteria bacterium Yellowstone B-Prime]
URE1_SYNJB - Urease subunit alpha OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=ureC PE=3 SV=1
 255.0 [0..3] [503..67]
gi|221325146 - gi|221325146|ref|ZP_03606440.1| urease subunit alpha [Bacillus subtilis subsp. subtilis str. SMY]
gi|221320861 - gi|221320861|ref|ZP_03602155.1| urease subunit alpha [Bacillus subtilis subsp. subtilis str. JH642]
gi|221315949 - gi|221315949|ref|ZP_03597754.1| urease subunit alpha [Bacillus subtilis subsp. subtilis str. NCIB 36...
URE1_BACSU - Urease subunit alpha OS=Bacillus subtilis GN=ureC PE=1 SV=1
URE1_BACSU - Urease subunit alpha OS=Bacillus subtilis (strain 168) GN=ureC PE=1 SV=1
 253.0 [0..2] [503..64]
gi|69257830, gi|... - gi|69257830|ref|ZP_00606748.1| Urease [Magnetococcus sp. MC-1], gi|68246713|gb|EAN28807.1| Urease [M...
 252.0 [0..2] [503..77]
URE1_SYNJA - Urease subunit alpha OS=Synechococcus sp. (strain JA-3-3Ab) GN=ureC PE=3 SV=1
gi|86605319 - gi|86605319|ref|YP_474082.1| urease, alpha subunit [Cyanobacteria bacterium Yellowstone A-Prime]
 251.0 [0..2] [503..64]
URE1_BACSB - Urease subunit alpha OS=Bacillus sp. (strain TB-90) GN=ureC PE=1 SV=1
gi|216362, gi|10... - gi|216362|dbj|BAA03325.1| urease alpha subunit [Bacillus sp. TB-90], pir||C36950 urease (EC 3.5.1.5)...
 251.0 [0..2] [497..65]

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Predicted Domain #1
Region A:
Residues: [1-465] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGHTCDVFV GKLIHTPSLG ELEITDATVG VYNGKIVFLE KSMTPKTLEE AKSHHLLKEA  60
   61 TIHKLKPLQF MFPGLIDTHI HAPQYPNSGI GIDVPLLQWL EKYTFPLESS LADLEEARQV 120
  121 YKRVVERTLS NGTTFASYFS TLHTPTSALL AEICYSYGQR AYIGKCNMNN LSPDHYCEKS 180
  181 AESSLEATRQ LISYMSILDP KREMVTPIIT PRFAPSCTED LLSGCGELAE KHNLPIQTHI 240
  241 SENTSEIELV KELFPERKSY ADVYDYYKLL TPQTILAHAI HLEDEEIELL TKRSSGISHC 300
  301 PTSNSILASG LANVRKLLDS GINVGLGTDV SGGYAPSILI ALRHAAMTSR SLSYVLGDPK 360
  361 VMLDLSELLY LATQGGAEVV SRGDQVGSFA VGKYWDALIV DLSAETHSCV DIFERDTWPV 420
  421 MLSKWVFTSD DRNLAQVWVN GRLVSGFEMK ANLKNSTPLT NGVTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.045757
Match: 2uz9A
Description: No description for 2uz9A was found.

Predicted functions:

Term Confidence Notes
guanine deaminase activity 3.78802420851729 bayes_pls_golite062009
hydrolase activity 3.06979421893431 bayes_pls_golite062009
deaminase activity 1.79186203771221 bayes_pls_golite062009
catalytic activity 1.70199291046899 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.60895003474033 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides 0.787370269329878 bayes_pls_golite062009
binding 0.771164376899668 bayes_pls_golite062009
nucleic acid binding 0.629962267754185 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 0.573107361273483 bayes_pls_golite062009
transcription regulator activity 0.506159010274668 bayes_pls_golite062009
DNA binding 0.462348875991261 bayes_pls_golite062009
peptidase activity 0.370872229900721 bayes_pls_golite062009
dihydroorotase activity 0.203044795244555 bayes_pls_golite062009
adenine deaminase activity 0.0215597395342074 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [466-527] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGHQVFKELT QAHLLPRTQC VDTPPSCCGG HCCKEESCRT ENCKGAYPAN ATVTVEEDSG  60
   61 MS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle