| Protein: | Myb-PE, Myb-PA, ... |
| Organism: | Drosophila melanogaster |
| Length: | 657 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Myb-PE, Myb-PA, ....
| Description | E-value | Query Range |
Subject Range |
|
|
439.0 | [0..1] | [657..1] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MASASTENGE ELMNYGSNSD SEESEYSENE DTQVCDKDSQ QNSNADSGYP LDSPELQDSK 60
61 TTGQKGQNKS GKTSIGAVHP NYGF
|
| Detection Method: |  |
| Confidence: | 40.69897 |
| Match: | 1h8aC |
| Description: | v-Myb |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [85-238] |
1 11 21 31 41 51
| | | | | |
1 GKRWSKSEDV LLKQLVETHG ENWEIIGPHF KDRLEQQVQQ RWAKVLNPEL IKGPWTRDED 60
61 DMVIKLVRNF GPKKWTLIAR YLNGRIGKQC RERWHNHLNP NIKKTAWTEK EDEIIYQAHL 120
121 ELGNQWAKIA KRLPGRTDNA IKNHWNSTMR RKYD
|
| Detection Method: | |
| Confidence: | 46.39794 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.14048290764066 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.666799964992178 | bayes_pls_golite062009 |
| actin binding | 0.618026108235131 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
| DNA helicase activity | 0.187022204923867 | bayes_pls_golite062009 |
|
Region A: Residues: [239-367] |
1 11 21 31 41 51
| | | | | |
1 VERRSVNASG SDLKSSRTHL ITLIKSGGIS KCMNNMQHNK ESGGEAVNKS ENADGASVTA 60
61 VKGGDLAQES QDDHQKGSNL AHLSMQHLIK LTMPRQTPII LKRTRKHIPE THHQAGCSSS 120
121 ETFNQEEAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [368-580] |
1 11 21 31 41 51
| | | | | |
1 GNARSRPPSS PVISPIKSLP FSPSHFLKSP CLTTFEDMDL RASTPVTKVY NRVGMEIKKE 60
61 METSSIETPH KSQLGPRTPT PFKKALAAIG KKRDGRRYEP SSPSSLVEDL AEIIHEEHLS 120
121 NSLTANNSKM MGAADQNSTL STEYNAQSPP HMKRARKSLL STWSSNHPYN AGSAKRIQPF 180
181 ETETPSKFLT SPGDILKDTL CSEQDLPFDE GRK
|
| Detection Method: | |
| Confidence: | 5.49485 |
| Match: | PF09316.1 |
| Description: | No description for PF09316.1 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [581-657] |
1 11 21 31 41 51
| | | | | |
1 ENRPFHNRRI NKYRGGLTYD HVIDPKWARV ACGKSRDQMF MEEQAYACLK NLSCISRSLN 60
61 FEKQKCLVNS FDRFGSL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
