| Protein: | rdgB-PB, rdgB-PF |
| Organism: | Drosophila melanogaster |
| Length: | 1250 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rdgB-PB, rdgB-PF.
| Description | E-value | Query Range |
Subject Range |
|
|
1571.0 | [0..1] | [1247..1] |
|
Region A: Residues: [1-282] |
1 11 21 31 41 51
| | | | | |
1 MLIKEYRIPL PLTVEEYRIA QLYMIAKKSR EESHGEGSGV EIIINEPYKD GPGGNGQYTK 60
61 KIYHVGNHLP GWIKSLLPKS ALTVEEEAWN AYPYTRTRYT CPFVEKFSLD IETYYYPDNG 120
121 YQDNVFQLSG SDLRNRIVDV IDIVKDQLWG GDYVKEEDPK HFVSDKTGRG PLAEDWLEEY 180
181 WREVKGKKQP TPRNMSLMTA YKICRVEFRY WGMQTKLEKF IHDVALRKMM LRAHRQAWAW 240
241 QDEWFGLTIE DIRELERQTQ LALAKKMGGG EECSDDSVSE PY
|
| Detection Method: |  |
| Confidence: | 123.0 |
| Match: | 1kcmA |
| Description: | Phoshatidylinositol transfer protein, PITP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phospholipid transporter activity | 5.13837461289632 | bayes_pls_golite062009 |
| lipid transporter activity | 4.4358073696145 | bayes_pls_golite062009 |
| phosphatidylinositol transporter activity | 2.88424241201993 | bayes_pls_golite062009 |
| transporter activity | 2.27726025087174 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.15798050058248 | bayes_pls_golite062009 |
| binding | 2.03322388415011 | bayes_pls_golite062009 |
| sterol binding | 1.69869946950041 | bayes_pls_golite062009 |
| cholesterol binding | 1.2916246557678 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.09413284791115 | bayes_pls_golite062009 |
| phosphatidylcholine transmembrane transporter activity | 1.08589653256802 | bayes_pls_golite062009 |
| cholesterol transporter activity | 0.971604403704219 | bayes_pls_golite062009 |
| sterol transporter activity | 0.84702583633369 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.584604660695011 | bayes_pls_golite062009 |
| protein binding | 0.43929659331502 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.295257921753146 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.286459038638072 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.265156292873733 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.256503527440737 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.21859262454477 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.215063584310921 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.214776368903272 | bayes_pls_golite062009 |
| lipid binding | 0.207466011012419 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0954103313829049 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0415343979510595 | bayes_pls_golite062009 |
| catalytic activity | 0.0116392906163881 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.00274551209125462 | bayes_pls_golite062009 |
|
Region A: Residues: [283-489] |
1 11 21 31 41 51
| | | | | |
1 VSTAATAAST TGSERKKSAP AVPPIVTQQP PSAEASSDEE GEEEEDDDED ENDAIGTGVD 60
61 LSANQGGSAQ RSRSQSIQMA QKGKFGSKGA LHSPVGSAHS FDLQVANWRM ERLEVDSKSN 120
121 SDEEFFDCLD TNETNSLAKW SSLELLGEGD DSPPPHGGPS SAASVGGRGN SRQEDSIFNQ 180
181 DFLMRVASER GNKRQLRSSA SVDRSHD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [490-729] |
1 11 21 31 41 51
| | | | | |
1 SSPPGSPSTP SCPTTILILV VHAGSVLDAA SELTAKKSDV TTFRGSFEAV MRQHYPSLLT 60
61 HVTIKMVPCP SICTDALGIL SSLSPYSFDA SPSAADIPNI ADVPIGAIPL LSVASPEFHE 120
121 TVNKTVAAAN IVYHEFLKSE EGHGFSGQIV MLGDSMGSLL AYEALCRSNG SQPGTASGAS 180
181 NSGGDAATNI NTHNPLSPRN SRLDDDERFI EADLDAKRLL VAPSPRRRRS SSSSDSRATK 240
241
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [730-931] |
1 11 21 31 41 51
| | | | | |
1 LDFEVCDFFM FGSPLSVVLA ARKLHDAKAA LPRPNCHQVY NLFHPTDPIA SRLEPLLSAR 60
61 FSILAPVNVP RYAKYPLGNG QPLHLLEVIQ SHPQHFNDGN NLLAGRRLSD ASMQSTISGL 120
121 IENVSLSTIH ALQNKWWGTK RLDYALYCPE GLSNFPAHAL PHLFHASYWE SPDVIAFILR 180
181 QIGKFEGIPF VGSNDDKDNA SF
|
| Detection Method: | |
| Confidence: | 92.49485 |
| Match: | PF02862.8 |
| Description: | No description for PF02862.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [932-1250] |
1 11 21 31 41 51
| | | | | |
1 HPGQPREKWI KKRTSVKLKN VAANHRANDV IVQEGREQRL NARFMYGPLD MITLHGEKVD 60
61 VHIMKDPPAG EWTFLSTEVT DKNGRISYSI PDQVSLGYGI YPVKMVVRGD HTSVDCYMAV 120
121 VPPLTECVVF SIDGSFTASM SVTGRDPKVR AGAVDVCRHW QELGYLLIYI TGRPDMQQQR 180
181 VVSWLSQHNF PHGLISFADG LSTDPLGHKT AYLNNLVQNH GISITAAYGS SKDISVYTNV 240
241 GMRTDQIFIV GKVGKKLQSN ATVLSDGYAA HLAGLQAVGG SRPAKGNARM VIPRGCFNLP 300
301 GQTANPRRRR LHEQATNEN
|
| Detection Method: | |
| Confidence: | 2.58 |
| Match: | 2i33A |
| Description: | No description for 2i33A was found. |
