| Protein: | rdgB-PA, rdgB-PD... |
| Organism: | Drosophila melanogaster |
| Length: | 1259 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rdgB-PA, rdgB-PD....
| Description | E-value | Query Range |
Subject Range |
|
|
1539.0 | [0..1] | [1247..1] |
|
Region A: Residues: [1-275] |
1 11 21 31 41 51
| | | | | |
1 MLIKEYRIPL PLTVEEYRIA QLYMIAKKSR EESHGEGSGV EIIINEPYKD GPGGNGQYTK 60
61 KIYHVGNHLP GWIKSLLPKS ALTVEEEAWN AYPYTRTRYT CPFVEKFSLD IETYYYPDNG 120
121 YQDNVFQLSG SDLRNRIVDV IDIVKDQLWG GDYVKEEDPK HFVSDKTGRG PLAEDWLEEY 180
181 WREVKGKKQP TPRNMSLMTA YKICRVEFRY WGMQTKLEKF IHDVALRKMM LRAHRQAWAW 240
241 QDEWFGLTIE DIRELERQTQ LALAKKMGGG EECSD
|
| Detection Method: |  |
| Confidence: | 121.0 |
| Match: | 1kcmA |
| Description: | Phoshatidylinositol transfer protein, PITP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phospholipid transporter activity | 5.13837461289632 | bayes_pls_golite062009 |
| lipid transporter activity | 4.4358073696145 | bayes_pls_golite062009 |
| phosphatidylinositol transporter activity | 2.88424241201993 | bayes_pls_golite062009 |
| transporter activity | 2.27726025087174 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.15798050058248 | bayes_pls_golite062009 |
| binding | 2.03322388415011 | bayes_pls_golite062009 |
| sterol binding | 1.69869946950041 | bayes_pls_golite062009 |
| cholesterol binding | 1.2916246557678 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.09413284791115 | bayes_pls_golite062009 |
| phosphatidylcholine transmembrane transporter activity | 1.08589653256802 | bayes_pls_golite062009 |
| cholesterol transporter activity | 0.971604403704219 | bayes_pls_golite062009 |
| sterol transporter activity | 0.84702583633369 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.584604660695011 | bayes_pls_golite062009 |
| protein binding | 0.43929659331502 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.295257921753146 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.286459038638072 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.265156292873733 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.256503527440737 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.21859262454477 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.215063584310921 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.214776368903272 | bayes_pls_golite062009 |
| lipid binding | 0.207466011012419 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0954103313829049 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0415343979510595 | bayes_pls_golite062009 |
| catalytic activity | 0.0116392906163881 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.00274551209125462 | bayes_pls_golite062009 |
|
Region A: Residues: [276-346] |
1 11 21 31 41 51
| | | | | |
1 DSVSEPYVST AATAASTTGS ERKKSAPAVP PIVTQQPPSA EASSDEEGEE EEDDDEDEND 60
61 AIGTGVDLSA N
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [347-491] |
1 11 21 31 41 51
| | | | | |
1 QGGSAQRSRS QSIQMAQKGK FGSKGALHSP VGSAHSFDLQ VANWRMERLE VDSKSNSDEE 60
61 FFDCLDTNET NSLAKWSSLE LLGEGDDSPP PHGGPSSAAS VGGRGNSRQE DSIFNQDFLM 120
121 RVASERGNKR QLRSSASVDR SHDSS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [492-571] |
1 11 21 31 41 51
| | | | | |
1 PPGSPSTPSC PTTILILVVH AGSVLDAASE LTAKKSDVTT FRGSFEAVMR QHYPSLLTHV 60
61 TIKMVPCPSI CTDALGILSS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [572-741] |
1 11 21 31 41 51
| | | | | |
1 LSPYSFDASP SAADIPNIAD VPIGAIPLLS VASPEFHETV NKTVAAANIV YHEFLKSEEG 60
61 HGFSGQIVML GDSMGSLLAY EALCRSNGSQ PGTASGASNS GGDAATNINT HNPLSPRNSR 120
121 LDDDERFIEA DLDAKRLLVA PSPRRRRSSS SSDSRATKLD FEVCDFFMFG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [742-928] |
1 11 21 31 41 51
| | | | | |
1 SPLSVVLAAR KLHDAKAALP RPNCHQVYNL FHPTDPIASR LEPLLSARFS ILAPVNVPRY 60
61 AKYPLGNGQP LHLLEVIQSH PQHFNDGNNL LAGRRLSDAS MQSTISGLIE NVSLSTIHAL 120
121 QNKWWGTKRL DYALYCPEGL SNFPAHALPH LFHASYWESP DVIAFILRQI GKFEGIPFVG 180
181 SNDDKDN
|
| Detection Method: | |
| Confidence: | 92.49485 |
| Match: | PF02862.8 |
| Description: | No description for PF02862.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [929-1259] |
1 11 21 31 41 51
| | | | | |
1 ASFHPGQPRE KWIKKRTSVK LKNVAANHRA NDVIVQEGRE QRLNARFMYG PLDMITLHGE 60
61 KVDVHIMKDP PAGEWTFLST EVTDKNGRIS YSIPDQVSLG YGIYPVKMVV RGDHTSVDCY 120
121 MAVVPPLTEC VVFSIDGSFT ASMSVTGRDP KVRAGAVDVC RHWQELGYLL IYITGRPDMQ 180
181 QQRVVSWLSQ HNFPHGLISF ADGLSTDPLG HKTAYLNNLV QNHGISITAA YGSSKDISVY 240
241 TNVGMRTDQI FIVGKVGKKL QSNATVLSDG YAAHLAGLQA VGGSRPAKGN ARMVIPRGCF 300
301 NLPGQTANPR RRRYLERKTV SSCCLMVFQT T
|
| Detection Method: | |
| Confidence: | 2.53 |
| Match: | 2i33A |
| Description: | No description for 2i33A was found. |
