| Protein: | Lig4-PA |
| Organism: | Drosophila melanogaster |
| Length: | 918 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lig4-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
620.0 | [0..2] | [918..7] |
|
Region A: Residues: [1-665] |
1 11 21 31 41 51
| | | | | |
1 MSVDIASTIK FRDICSLFEK IKATQKVANK EEVLKSYYES FCRHRESFRR QTGLNNDQPE 60
61 DGASSFYSVL RLLLPGADTG RDTYGLQITA LGRLYIRVLQ LPTDSSDAIR LQHRNGNMYR 120
121 DYGDVVYSVL KPRCFNPPSN LRLKEIHQML DTIANEDTEV KQQQLIRFTE QASPEEQKWL 180
181 IRLLLKSLGL GIGEQKIFGV LHPKAQDIYQ RCSDLGHVCN LLADRTTDLD ASSSKDSKAA 240
241 VKFVNLNSVI RPFHQIRPML CERFPGDIQE LMQSDVLYLE TKMDGERFQL HIDRGRFMYI 300
301 SRNGVDYTRN FGHSYDHGTL TPKLRGLLPL GLESIILDGE MMVWDTNKLR FREKGENTDV 360
361 KSLKPEGSWQ PCFVVYDLLY FNGQSLLDHT YIQRAYKLQK LIVEQSGVLQ LMRARKIGSV 420
421 QEFNELFQQA LDSHAEGIVL KKQGSRYQPG VRLGGGWYKD KADYIKGLIT EFDVLIIGAF 480
481 YNRKRTFVDS FLLGVLQPAP PGSSNRPEVF SIGVVANNTK QRGVLNHTLK PHWHDVVNEP 540
541 PPLWFHYKPK ERSGCPDLWI EPQNSVILQV KAADLAPNGA FFTRKSLHFP RTEMKRDDKT 600
601 WSECMTLKEF NDLCGGPLAI KKLNKRQLRL EDVTTKRKQM RMTPSERSRL GLAVYEKRYD 660
661 ASTSA
|
| Detection Method: |  |
| Confidence: | 123.0 |
| Match: | 1x9nA |
| Description: | Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA ligase activity | 10.0279903057926 | bayes_pls_golite062009 |
| ligase activity, forming phosphoric ester bonds | 9.92846900587219 | bayes_pls_golite062009 |
| DNA ligase (ATP) activity | 8.51283882444113 | bayes_pls_golite062009 |
| DNA ligase (NAD+) activity | 3.17397926295565 | bayes_pls_golite062009 |
| ligase activity | 2.36807839237461 | bayes_pls_golite062009 |
| catalytic activity | 2.15370807854636 | bayes_pls_golite062009 |
| binding | 1.82998145778732 | bayes_pls_golite062009 |
| protein binding | 1.38006517521813 | bayes_pls_golite062009 |
| nucleic acid binding | 1.06318697852063 | bayes_pls_golite062009 |
| DNA binding | 0.920391596538289 | bayes_pls_golite062009 |
|
Region A: Residues: [666-918] |
1 11 21 31 41 51
| | | | | |
1 STSKLFDGLS FCILSGSAGR HSKHQLQELA VKNGGCIVEN PLPNDPKCFC IAGDETFLVK 60
61 RLILQQPRTC DIVRMEWLLR VCQKQELELK PRDLIAATEP LQQDLAECFD RHGDSYTKDI 120
121 ANVEELQDLL QGIELTADNV AGITASNLNA LEDQLLDGKK NLNMFRNLNA FFYSPHGDEV 180
181 AKLLFLQNGG RIVDDSDPQL NLGFICMSSD IDNDHFEHWL HNHSKLTTDK VLNSAWIHQC 240
241 HREGILLPMH SFV
|
| Detection Method: | |
| Confidence: | 29.69897 |
| Match: | 1z56C |
| Description: | Co-Crystal Structure of Lif1p-Lig4p |
Matching Structure (courtesy of the PDB): |
|
