| Protein: | Lim1-PA |
| Organism: | Drosophila melanogaster |
| Length: | 505 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lim1-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
201.0 | [0..26] | [474..163] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MAFGAVLHTS QHNIGRSEPP VGVGDPCAGC NKPILDKFLL NVLERAWHAS CVRCCECLQP 60
61 LTDKCFSRES KLYCRNDFFR RYGTKCSGCG QGIAPSDLVR KPRDKVFHLN CFTCCICRKQ 120
121 LSTGEQLYVL DDNKFICKDD YLLGKAPSCG H
|
| Detection Method: |  |
| Confidence: | 30.0 |
| Match: | 2dfyX |
| Description: | No description for 2dfyX was found. |
|
Region A: Residues: [152-313] |
1 11 21 31 41 51
| | | | | |
1 NSLSDSLMGS ASEDDDDDDP PHLRATALGL GVLGPNGPDS AGGPLGTSDI SVQSMSTDSK 60
61 NTHDDSDQGS LDGDPDGRGD SQAENKSPDD ANGSKRRGPR TTIKAKQLEV LKTAFNQTPK 120
121 PTRHIREQLA KETGLPMRVI QVWFQNKRSK ERRMKQITSM GR
|
| Detection Method: | |
| Confidence: | 4.17 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.86538715425734 | bayes_pls_golite062009 |
| DNA binding | 4.40186699787632 | bayes_pls_golite062009 |
| nucleic acid binding | 4.28652307290136 | bayes_pls_golite062009 |
| transcription factor activity | 3.78935192723648 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25454589469681 | bayes_pls_golite062009 |
| transcription activator activity | 2.92652250400688 | bayes_pls_golite062009 |
| binding | 2.92574888336072 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.91588376840709 | bayes_pls_golite062009 |
| protein binding | 1.84594855626241 | bayes_pls_golite062009 |
| transcription repressor activity | 1.69615348178304 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.57633910767639 | bayes_pls_golite062009 |
| chromatin binding | 1.46954724788757 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.44773725829085 | bayes_pls_golite062009 |
| transcription factor binding | 1.24678737091956 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.691780246385357 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.201150053959035 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0723215858239072 | bayes_pls_golite062009 |
|
Region A: Residues: [314-505] |
1 11 21 31 41 51
| | | | | |
1 PPFFGGARKM RGFPMNLSPG GLDDGPGFPY FAADAKFEFG YGGPFHPHDG PYFPGHPGGP 60
61 MPFNAPGGPM DHSGPIPMVN EFGLTPEATF LGQAGGPPMQ LQSAVGPPPP PPPPSAEHLM 120
121 AAAAAAAQQQ AAQQQQQQQQ QQQQQQQQNA QQAANQTQQQ QQQNGPRTNS PEFMSSANFS 180
181 EPQNMQNEGL VW
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
