| Protein: | Nf-YC-PA |
| Organism: | Drosophila melanogaster |
| Length: | 601 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nf-YC-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
263.0 | [0..24] | [524..2032] |
|
Region A: Residues: [1-234] |
1 11 21 31 41 51
| | | | | |
1 MYATNNGGTN KAPNSNATSM FDNTITVTPI KMELGQAYAK SQNSAAMQRR TPNAVVVTSS 60
61 STVSSAQQQQ QQQGQQQQQT VPMASLVSNA CTLVNPSMSV TVATTVASGA KEKTTKATRT 120
121 QVARKPPPTI DNFWPNIVSE VHSIGQVDAK HQVLPLARIK KIMKLDENAK MIAGEAPLLF 180
181 AKACEYFIQE LTMHAWVHTE ESRRRTLQRS DIAQAIANYD QFDFLIDIVP REEI
|
| Detection Method: |  |
| Confidence: | 35.045757 |
| Match: | 1n1jB |
| Description: | Nuclear transcription factor Y subunit gamma (Nf-Yc2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| DNA binding | 2.84801656088633 | bayes_pls_golite062009 |
| nucleic acid binding | 2.61296736453579 | bayes_pls_golite062009 |
| transcription regulator activity | 2.30478015157761 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.18120033767195 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription factor activity | 1.01889555697279 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.378390077792097 | bayes_pls_golite062009 |
| transcription factor binding | 0.20278000165075 | bayes_pls_golite062009 |
| transcription activator activity | 0.16305156761639 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.0427278296123499 | bayes_pls_golite062009 |
|
Region A: Residues: [235-304] |
1 11 21 31 41 51
| | | | | |
1 KPSSAQKTKD GSTSSSSGMA GAASSAASTS NTATSNAAAS VAGNATATGN FVASGSTVPA 60
61 TTAGGLKLDT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [305-523] |
1 11 21 31 41 51
| | | | | |
1 TGATNAAEVL GFSTVNSDIF SAQLQQQQQQ QQQHAAQQQQ QQQQQQHHQA HPQQVQIIQQ 60
61 GAGGQQLQYF IALPSQQAAQ LVQQPQPAQN HLPINILSTQ QPTQQLILTA GPNGQLTATP 120
121 APQTTAQQQT ALLQNLAQQQ QQHQQHQQQI QLLQQVVTPT GELTNVPIAI NASHLNLLQR 180
181 LQMQQQQQQQ QQQQQQQQQQ QQVIIPTQLL TTQQLLQLG
|
| Detection Method: | |
| Confidence: | 7.045757 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [524-601] |
1 11 21 31 41 51
| | | | | |
1 GAPTVAHQQQ QQQQQHANLT QQSNASAVAS GTPIFINSTM TGAQAAATQA QQQQSAQQQQ 60
61 AQTISTMSTD RTLTGGFR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
