| Protein: | iav-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1123 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for iav-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
594.0 | [0..1] | [1123..1] |
|
Region A: Residues: [1-337] |
1 11 21 31 41 51
| | | | | |
1 MKFLLKKCLR KKAPEMKPGA ILDAVISQSS ATACKCLLYK LADYKRGGDL IDAINSGGLI 60
61 AVEQLIREQF GVFMYNDGKG QVINRAEFLR WKYRDHTEVT IPIEASLSIH DPLGKWEDHK 120
121 ACWQMQYRGA LGESLLHVLI ICDSKVHTKL ARVLLRVFPN LALDVMEGEE YLGASALHLS 180
181 IAYSNNELVA DLIEAGADIH QRAIGSFFLP RDQQRANPAK STDYEGLAYM GEYPLAWAAC 240
241 CANESVYNLL VDCGSDPDAQ DSFGNMILHM VVVCDKLDMF GYALRHPKTP AKNGIVNQTG 300
301 LTPLTLACKL GRAEVFREML ELSAREFWRY SNITCSG
|
| Detection Method: |  |
| Confidence: | 77.30103 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ion transmembrane transporter activity | 2.61798755733032 | bayes_pls_golite062009 |
| binding | 2.54053419376679 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.38927727467074 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.34936907992218 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.1976632766775 | bayes_pls_golite062009 |
| calcium channel activity | 2.0989077584416 | bayes_pls_golite062009 |
| protein binding | 1.54890102798695 | bayes_pls_golite062009 |
| channel activity | 1.40958988162637 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 1.40958988162637 | bayes_pls_golite062009 |
| ion channel activity | 1.34720887980415 | bayes_pls_golite062009 |
| cation channel activity | 1.34152568706616 | bayes_pls_golite062009 |
| substrate-specific channel activity | 1.25809788464511 | bayes_pls_golite062009 |
| transporter activity | 1.19000052859754 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.02570255606772 | bayes_pls_golite062009 |
| gated channel activity | 0.69203780961853 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.581121752453591 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.57950150183949 | bayes_pls_golite062009 |
| ankyrin binding | 0.550286963220929 | bayes_pls_golite062009 |
| mechanically-gated ion channel activity | 0.183140618513339 | bayes_pls_golite062009 |
| mechanically gated channel activity | 0.183140618513339 | bayes_pls_golite062009 |
|
Region A: Residues: [338-449] |
1 11 21 31 41 51
| | | | | |
1 YPLNALDTLL PDGRTNWNSA LFIILNGTKP EHLDMLDGGI IQRLLEEKWK TFAQNQFLKR 60
61 LLILSTHLLC LSVSVYLRPA HDGEAEDEDS EGSDASAAAL LDIQSDEGDS GG
|
| Detection Method: | |
| Confidence: | 8.154902 |
| Match: | 1sw6A |
| Description: | Swi6 ankyrin-repeat fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [450-806] |
1 11 21 31 41 51
| | | | | |
1 GDYNAQTVAR YCAEFATLVG VLSYVIFQQG DEIKNQGLSA FLKQLSHAPA KAIFLFSNLL 60
61 ILACIPFRLI GDTDTEEAIL IFAVPGSWFL LMFFAGAIRL TGPFVTMIYS MITGDMFTFG 120
121 IIYCIVLCGF SQAFYFLYKG HPQVQSTMFN TYTSTWMALF QTTLGDYNYP DLNQTTYPNL 180
181 SKTVFVIFMI FVPILLLNML IAMMGNTYVT VIEQSEKEWM KQWAKIVVTL ERAVPQADAK 240
241 GYLEAYSIPL GPSDDSGFEV RGVMVIKSKS KTRAKQRKGA VSNWKRVGRV TLTALKKRGM 300
301 TGEEMRRLMW GRASISSPVK VTKQKLKDPY NLHTDSDFTN AMDMLTFASN PASSNGV
|
| Detection Method: | |
| Confidence: | 1.16 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [807-1123] |
1 11 21 31 41 51
| | | | | |
1 TLRSVTAPPP APPAPDPFRE LIMMSDQRPE THDPHYFAGL QQLANKAFDL VEQTMKTQPQ 60
61 APVAKKVDPL PVASVAKASP AAPATQATAT AAAASDLMAM PLPISNLSNL FQDPKDIVDP 120
121 KKLEEFMAML AEVETEESDS GGPILGKLSL AKRTHNALSK AEIRRDQQGF EGHSHGQFQP 180
181 MSSVWAPPGL DVDTGFHFDE AVAEEVLTIE QEAEVETEDG NGGQDSEDIP TAEEVHATMK 240
241 QFHLRKCQPA QDEAARRAKS ARVRRRNKVS PEQSDDPDER SQRGRSAYTR RTQSPPDPLE 300
301 PWSTRELQDI NKILARK
|
| Detection Method: | |
| Confidence: | 1.4 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
