| Protein: | Spx-PA |
| Organism: | Drosophila melanogaster |
| Length: | 347 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Spx-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
221.0 | [0..7] | [346..185] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MAAGPIAERN QDATIYAGGL DDKVSETLLW ELFVQAGPVV NVHMPKDRVT QMHQGYGFVE 60
61 FLSEEDADYG IKIMNMIKLY GKPIRVNKAS A
|
| Detection Method: |  |
| Confidence: | 21.69897 |
| Match: | 1x5uA |
| Description: | Solution structure of RRM domain in splicing factor 3B |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.50398990564944 | bayes_pls_golite062009 |
| binding | 4.16717332578111 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.73925834998328 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.10597581610211 | bayes_pls_golite062009 |
| transcription factor activity | 0.873765500321315 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.294937517750882 | bayes_pls_golite062009 |
|
Region A: Residues: [92-225] |
1 11 21 31 41 51
| | | | | |
1 HQKNLDVGAN IFIGNLDVEV DEKLLYDTFS AFGVILQTPK IMRDPETGKS KSFAFINFAS 60
61 FEASDAAMDA MNGQYLCNRP ISVSYAFKKD HKGERHGSAA ERLLAAQNPS THADRPHQLF 120
121 ADAPVQTMMP QMPG
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1h2tZ |
| Description: | CBP20, 20KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 6.40066880991253 | bayes_pls_golite062009 | |
| RNA binding | 6.32219487559982 | bayes_pls_golite062009 |
| mRNA binding | 4.87640532914983 | bayes_pls_golite062009 |
| nucleic acid binding | 4.23531598582972 | bayes_pls_golite062009 |
| binding | 4.00350364031155 | bayes_pls_golite062009 |
| snRNA binding | 3.77997752511163 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.73908382552928 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.7133834347239 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.55628738360472 | bayes_pls_golite062009 |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| DNA binding | 1.74537942253096 | bayes_pls_golite062009 |
| structural molecule activity | 1.57342338925793 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.09350203162237 | bayes_pls_golite062009 |
| protein binding | 1.04187682253755 | bayes_pls_golite062009 |
| transcription factor activity | 0.894914712180715 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.238420044364247 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.229644510503376 | bayes_pls_golite062009 |
|
Region A: Residues: [226-347] |
1 11 21 31 41 51
| | | | | |
1 QIPAQMPGQM MPPPMMAPPP PVVPVSNNNM GMLAPPPPVP QPAPFPATIP PPPLPPMTGG 60
61 QPPLPPAMGI PPPPRMMQPN AWAPPGMPAP PPRPPPTNWR PPPVPFPPTP YARPYQPDGY 120
121 QY
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
