| Protein: | zfh1-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1054 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for zfh1-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
1202.0 | [0..3] | [1052..308] |
|
Region A: Residues: [1-350] |
1 11 21 31 41 51
| | | | | |
1 MLSCLAPSSS RFGQEDTIIQ QSMPSTSPFA MQFPSLASTL LHHNQSPKHS NPGSSGIQDA 60
61 HPNQPGAAAD AFLVKCTQCH KRFPEYQSLS EHIASEHPHD KLNCGAAQPE SDAEDEQSNM 120
121 SGSSRRYAKS PLASNNNSST ANANNNSTSS QSMNNNSELA KNHNSANKMS PMCSPGSLTP 180
181 GDLFAQLQHP PPQLPPHLHA QFMAAAASLA MQSARTASSP SQQQQQQLQQ QQQLQQQQQH 240
241 QMAMQQLLPP QLPGSNSSVG SNSAYDLDLS APRSTSSPGS TTGDLSGAYP CMQCTASFAS 300
301 REQLEQHEQL HSPCGPAAVS NVSQTCRICH KAFANVYRLQ RHMISHDESA
|
| Detection Method: |  |
| Confidence: | 5.83 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [351-455] |
1 11 21 31 41 51
| | | | | |
1 LLRKFKCKEC DKAFKFKHHL KEHVRIHSGE KPFGCDNCGK RFSHSGSFSS HMTSKKCISM 60
61 GLKLNNNRAL LKRLEKSPGS ASSASRRSPS DHGKGKLPEQ PSLPG
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1un6B |
| Description: | THE CRYSTAL STRUCTURE OF A ZINC FINGER - RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [456-583] |
1 11 21 31 41 51
| | | | | |
1 LPHPMSYFAS DAQVQGGSAA PAPFPPFHPN YMNAALLAFP HNFMAAAAGL DPRVHPYSIQ 60
61 RLLQLSAAGQ QQREEEREEQ QKQQQHDEEE TPDEPKLVMD IEEPETKEMA PTPEATEAAT 120
121 PIKREESR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [584-667] |
1 11 21 31 41 51
| | | | | |
1 EASPDPESYR SSSQAIKQEQ EPLNVAEERQ TPVEEHAPVE HAADLRCSRC SKQFNHPTEL 60
61 VQHEKVLCGL IKEELEQHFQ QQQA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [668-803] |
1 11 21 31 41 51
| | | | | |
1 TSFALASASE EDEEDEEMDV EEEPRQESGE RKVRVRTAIN EEQQQQLKQH YSLNARPSRD 60
61 EFRMIAARLQ LDPRVVQVWF QNNRSRERKM QSFQNNQAAG AAPPMPIDSQ ASLTREDQPL 120
121 DLSVKRDPLT PKSESS
|
| Detection Method: | |
| Confidence: | 3.56 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.77786931095369 | bayes_pls_golite062009 |
| transcription regulator activity | 2.55586552794761 | bayes_pls_golite062009 |
| DNA binding | 2.44956708063674 | bayes_pls_golite062009 |
| transcription factor activity | 2.02834241432042 | bayes_pls_golite062009 |
| nucleic acid binding | 1.70881974574823 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.55892000506547 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.20814417016896 | bayes_pls_golite062009 |
| protein binding | 0.818425640290782 | bayes_pls_golite062009 |
| transcription activator activity | 0.63470910630708 | bayes_pls_golite062009 |
| transcription repressor activity | 0.554672261723419 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.290438006244452 | bayes_pls_golite062009 |
| transcription factor binding | 0.0689075518148576 | bayes_pls_golite062009 |
|
Region A: Residues: [804-881] |
1 11 21 31 41 51
| | | | | |
1 PPYIAPPSGE ALNPEAINLS RKFSTSASMS PASISPSSAA ALYFGAAPPP SPPNSQLDST 60
61 PRSGQAFPGL PPYMLPMS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [882-1054] |
1 11 21 31 41 51
| | | | | |
1 LPMEALFKMR PGGDFASNHA LMNSIKLPDY RGTSLSPGGS EKRSWRDDDS RISHEDEFGA 60
61 GVLMPPKPRR GKAETHGHAG DPDLPYVCDQ CDKAFAKQSS LARHKYEHSG QRPYQCIECP 120
121 KAFKHKHHLT EHKRLHSGEK PFQCSKCLKR FSHSGSYSQH MNHRYSYCKP YRE
|
| Detection Method: | |
| Confidence: | 58.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
