| Protein: | Sry-delta-PA |
| Organism: | Drosophila melanogaster |
| Length: | 433 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sry-delta-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
661.0 | [0..2] | [432..2434] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MDTCFFCGAV DLSDTGSSSS MRYETLSAKV PSSQKTVSLV LTHLANCIQT QLDLKPGARL 60
61 CPRCFQELSD YDTIMVNLMT TQKRLT
|
| Detection Method: |  |
| Confidence: | 0.992 |
| Match: | 1pzwA |
| Description: | Crystal structure of the zinc finger associated domain of the Drosophila transcription factor Grauzone |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.84932768708444 | bayes_pls_golite062009 |
| DNA binding | 3.45124926204188 | bayes_pls_golite062009 |
| nucleic acid binding | 3.34875987514951 | bayes_pls_golite062009 |
| binding | 2.8684204787273 | bayes_pls_golite062009 |
| transcription factor activity | 2.74592237402384 | bayes_pls_golite062009 |
| transcription activator activity | 1.45965791386122 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.44741411126911 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.32499836066598 | bayes_pls_golite062009 |
| protein binding | 1.30321965120678 | bayes_pls_golite062009 |
| transcription factor binding | 1.22761682002 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.1269808729848 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.0478696280786 | bayes_pls_golite062009 |
| structural molecule activity | 0.958501322313092 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.449959641856445 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.446369866668139 | bayes_pls_golite062009 |
| transcription repressor activity | 0.199267983374872 | bayes_pls_golite062009 |
| catalytic activity | 0.133319360419662 | bayes_pls_golite062009 |
|
Region A: Residues: [87-175] |
1 11 21 31 41 51
| | | | | |
1 TQLKGALKSE FEVPESGEDI LVEEVEIPQS DVETDADAEA DALFVELVKD QEESDTEIKR 60
61 EFVDEEEEED DDDDDEFICE DVDVGDSEA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [176-353] |
1 11 21 31 41 51
| | | | | |
1 LYGKSSDGED RPTKKRVKQE CTTCGKVYNS WYQLQKHISE EHSKQPNHIC PICGVIRRDE 60
61 EYLELHMNLH EGKTEKQCRY CPKSFSRPVN TLRHMRMHWD KKKYQCEKCG LRFSQDNLLY 120
121 NHRLRHEAEE NPIICSICNV SFKSRKTFNH HTLIHKENRP RHYCSVCPKS FTERYTLK
|
| Detection Method: | |
| Confidence: | 59.522879 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [354-433] |
1 11 21 31 41 51
| | | | | |
1 MHMKTHEGDV VYGVREEAPA DEQQVVEELH VDVDESEAAV TVIMSDNDEN SGFCLICNTN 60
61 FENKKELEHH LQFDHDVVLK
|
| Detection Method: | |
| Confidence: | 1.06 |
| Match: | 1zu1A |
| Description: | Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.47951889934838 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35187767955595 | bayes_pls_golite062009 |
| DNA binding | 4.31051339571017 | bayes_pls_golite062009 |
| transcription factor activity | 3.28758716579796 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.05542379535543 | bayes_pls_golite062009 |
| transcription activator activity | 1.97757778483124 | bayes_pls_golite062009 |
| transcription repressor activity | 1.44763794968807 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.26862497534835 | bayes_pls_golite062009 |
| chromatin binding | 1.26688155139311 | bayes_pls_golite062009 |
| transcription factor binding | 1.23738346570539 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.776754909146767 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.627794176881836 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
