| Protein: | woc-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1688 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for woc-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1067.0 | [0..1] | [1688..1] |
|
Region A: Residues: [1-416] |
1 11 21 31 41 51
| | | | | |
1 MEEISSLDSF GADSNARPES ATPRSEEQQD QDRQQTAPAA SETLDTPASP PAEDAAAQES 60
61 KPPPSKEADD DFEQISEGSL DADDNQSRDK AASTPADPVD AEEPAEEPTP NEEPQGGEDE 120
121 QPQTEAVRVD PQEEPEEAEE ETDALQATAE EVEAAAAEAD AVDGGPASPE AMDVDEGEVD 180
181 AEGEAEQEAE DDAALDREAT DDVDMQSVGA DSHQAEDAEP PEGRDEVDTS LEEQENGQDP 240
241 DEREKDAAAD EDDPDAEGDA ESEQVDENAE ETGEAEHGDD TVENVLEPEE SDVCLIPDDQ 300
301 ETEVTEAEKE LARENAEKAA EEEEAEERQA KTPDNDRKSP ADAAADPEDD SAAAVDATDV 360
361 SPTTPTADGV AAAANEEEAG GDVPDPDEPT AEESSSAGAG EPGSTPKIII SWIVGS
|
| Detection Method: |  |
| Confidence: | 21.09691 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [417-594] |
1 11 21 31 41 51
| | | | | |
1 VQKCKQCGDE KNCGFRYRSP EESEEMDKEK ENDKAEENAE EGEEEEARQK PAAPSGFEYI 60
61 CDTACVDALL EDQPGKYFVR RKKFLVEEVV REEGAAEAEA SADGEGGDAE EEATPANTQD 120
121 CLQCKDKTRC KYFIKQDQDC FYICNDDCFN LLNAEEPDKF KLKRHSIRVR NIGATTLQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [595-914] |
1 11 21 31 41 51
| | | | | |
1 PPQNSPTKRT DGSVVARTVE EAETARLDRI ESFRRRCADC EADINTDEKQ LMWETMDFCN 60
61 EVCLGSYQRT IGSTCETCKQ EVSSIALGKY CVRFGFDVRQ FCCAGCLNTF KKGLKTCSCC 120
121 QKDISGGQEG FLAPVGDKDQ FKDFCSQSCL RRYESMCNPR RKLRTDVCGV CNNQKPVRVE 180
181 MLLEDREHYF CSNPCFSAFK FVSNVNADPC AMCSKYFERR SAESYTIYNE QQSPKVFCSR 240
241 VCINVYIIVN RHIVSCQWCK VKKYNFDMIY QIGGPHDQET LTCSINCLTM HGVSCNISAR 300
301 AVTKCDNCSN FNTPQYHLTM
|
| Detection Method: | |
| Confidence: | 16.0 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| chromatin binding | 3.50591583802992 | bayes_pls_golite062009 |
| nucleic acid binding | 2.49465803051514 | bayes_pls_golite062009 |
| binding | 2.47962305876847 | bayes_pls_golite062009 |
| DNA binding | 2.45187248125336 | bayes_pls_golite062009 |
| transcription regulator activity | 2.16668329615638 | bayes_pls_golite062009 |
| structure-specific DNA binding | 2.1123891494681 | bayes_pls_golite062009 |
| histone binding | 1.89970441780885 | bayes_pls_golite062009 |
| transcription factor activity | 1.36935765588098 | bayes_pls_golite062009 |
| protein binding | 0.905022998164426 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.69281285557277 | bayes_pls_golite062009 |
| transcription activator activity | 0.55571422139212 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.425282485896749 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.311339098303136 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0320047263006993 | bayes_pls_golite062009 |
|
Region A: Residues: [915-1150] |
1 11 21 31 41 51
| | | | | |
1 SDASMRNFCT YQCVMQFQNQ FARAPLTLDS DLPPSSAGSS KSQQQSNRGN KNAAPFPTGL 60
61 PKRVKLKLSH TGKGGVGGKK SGSGTMLPVI STVQSLASGE TEARIGNLTV RRKRGRPRES 120
121 GTSSPPLSMP GVHPPAQRGR PRKHAVDYSA RSPSPTMSGG SSHMGIPVRR NTTTTMDFGP 180
181 ATVTETKIIT VPPYPKAVRN VNISCKPLTV TQGEQCSPDV RDCATQTEKD YSNKVL
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [1151-1312] |
1 11 21 31 41 51
| | | | | |
1 IPVPVPIFVP QPMYMYSAPF PVPVPIPLPI PVPIFIPTTR NTAQGILKEI KKIQDKMPED 60
61 PLEAELLMMA EMVAEEKHES DSDSDNEIKP DPGLVALQYQ NSLESVAQQQ QQQQVVDVSG 120
121 AGHNPYGDDM LQIALKMATG DYDNHHQTST VDLETSMTAN TI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1313-1381] |
1 11 21 31 41 51
| | | | | |
1 SSQSPMGHDG MGQMGVHHLD QQHHMLDATQ RTARGRKRGV GVVMDPPNRN SRSPVKRQRG 60
61 GEMDHSALQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1382-1688] |
1 11 21 31 41 51
| | | | | |
1 QQSQQAQQPQ EKPDAQMFLK YTFGVNAWKQ WVMTKNADIE KSSMRRRPFK TELLQMTADE 60
61 LNYSLCLFVK EVRKPNGTEY APDTIYYLVL GIQQYLYVNG RIDNIFYDPY YERFTECLDE 120
121 VARKFSVLYN DSQYIVTRVE EEHLWECKQL GAHSPHVLLS TLMFFNTKHF NLTTVEEHMQ 180
181 LSFSHIMKHW KRSSQNSKVP GSRNVLLRFY PPQAGLDANP RKKKVYEQQE NEENPLRCPV 240
241 RLYEFYLSKC PESVKTRNDV FYLQPERSCV PDSPVWYSTQ ALGQDALQRM LHRVKMVKEI 300
301 NIALLTT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
