| Protein: | ro-PB, ro-PA |
| Organism: | Drosophila melanogaster |
| Length: | 350 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ro-PB, ro-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
140.0 | [0..1] | [350..1] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MQRHKVEIGS PDGSPGIKRS DSLDPIANTT ILSVPQRPSS PRQFFERLYG HLETRSSENG 60
61 EIDVGTHAHK PPPCDTPYHS DGGSVSSPDI SISDERTSLA AYPAYDFYGH AKDYPQHPSQ 120
121 QHQQHHHHHH HPPQLVHQKL SYVSP
|
| Detection Method: |  |
| Confidence: | 1.05 |
| Match: | 2awzA |
| Description: | Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5h) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [146-253] |
1 11 21 31 41 51
| | | | | |
1 PPAIAAGGAA NPVLPHAFPA GFPSDPHFSA GFSAFLARRR RKEGRQRRQR TTFSTEQTLR 60
61 LEVEFHRNEY ISRSRRFELA ETLRLTETQI KIWFQNRRAK DKRIEKAQ
|
| Detection Method: | |
| Confidence: | 25.0 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [254-350] |
1 11 21 31 41 51
| | | | | |
1 IDQHYRNFVV ANGFMSSIMG QAATTMPPGG VTGGVAVGVG LNYYAAAATP AALPKDNTQD 60
61 ANFIDIDDQF QRQQQQKQQQ QQQQQRRRET TTPINIC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
