| Protein: | gi|40365347, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 881 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40365347, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
375.0 | [0..52] | [566..1] |
|
Region A: Residues: [1-108] |
1 11 21 31 41 51
| | | | | |
1 MYADNKRGLD KVTAATPPTH ALQQQQQQQH PHQQQQHLQH VLQLQQQQQQ HLQQQQHHLQ 60
61 HQMHTHHNFQ QHETSPTVSQ QQHMQQQQPQ TTQQQHATQQ QQQQQQQT
|
| Detection Method: |  |
| Confidence: | 1.17 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [109-191] |
1 11 21 31 41 51
| | | | | |
1 AGMFTRFDAN KSTKGASKMR RDLINAEIAN LRDLLPLPQS TRQRLSQLQL MALVCVYVRK 60
61 ANYFQQVFKR HNAMHHLHHQ TAT
|
| Detection Method: | |
| Confidence: | 3.39794 |
| Match: | 1an4A |
| Description: | Usf B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| transcription activator activity | 3.87875547821718 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.42035985454056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.39500382187264 | bayes_pls_golite062009 |
| protein binding | 2.64975291677725 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.42306484786159 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| transcription repressor activity | 0.955588849035129 | bayes_pls_golite062009 |
| promoter binding | 0.8576109846276 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.801830750183111 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.53175615551166 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
| protein dimerization activity | 0.20674648626116 | bayes_pls_golite062009 |
|
Region A: Residues: [192-578] |
1 11 21 31 41 51
| | | | | |
1 PNIGFSKALS GFLMMLTQNG KLLYISDNAA EYLGHSMEDL LIHGDSVYDI IDKQDHANIQ 60
61 AELNRNVPPQ PGGSSQASSG GAGGAGGAGD STSSNGSAAG AGGAGGASSL EGEHRMFLCR 120
121 MNVSRNARRQ MRFGDQKVVL VQGHYLSFLP LCSRNEPVFL ATCTPIAMPE TRECVVQGAT 180
181 NVFTTIHSMD MKIAHIDKNG EFHLGYDKST LQGTSWYNLI HSDNLTEAQK KHSLIIQSEQ 240
241 DRSCILLVRM QRSSGEYTWV HVVLQVRDSP DSTQQPVIVC TNQVLNDREA SIMLANSWLY 300
301 HYYTVQSKIQ FGMPLDSGIR VPPGTPSSGY YSPHSSHPPA TPGGATPNLG IASSFGPHHH 360
361 PHHSHHPHHH HHHHHPATAY HHHPHMG
|
| Detection Method: | |
| Confidence: | 58.0 |
| Match: | 1wa9A |
| Description: | Crystal Structure of the PAS repeat region of the Drosophila clock protein PERIOD |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [579-687] |
1 11 21 31 41 51
| | | | | |
1 TYGGVYHAKA AIELKEDQPL FCFQEPVDYS QVNSHVNPPN ATSTPNPPIS KSSTPPPPKK 60
61 RARKLEPLYL HAERSPAAAI TPEPDCYAIH THPAAAYATS SVVSSDASV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [688-881] |
1 11 21 31 41 51
| | | | | |
1 IYATIVPTRP RLPNKSLPPD PADFIEQWNP SPPWSESAQK ASLDSFGSSH ELSPCITTTP 60
61 PTPTSATPHQ SGLGTTQTIG PAFSFEWMSD PLVPVTYQQW PPTGDHHQHL SQHLSQSQNH 120
121 QNPLQQQQNE QLLLGQQPHL HQQHQHLALH HGRGEHSLEG ESQGVVVVPP IPISIPIPTA 180
181 TGHGDAGEPV EDRG
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
