| Protein: | bap-PA |
| Organism: | Drosophila melanogaster |
| Length: | 382 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bap-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
145.0 | [0..168] | [381..6] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MLNMESAGVS AAMAGLSKSL TTPFSINDIL TRSNPETRRM SSVDSEPEPE KLKPSSDRER 60
61 SISKSPPLCC RDLGLYKLTQ PKEIQPSARQ PSNYLQYYAA AMDNNNHHHQ ATGTSNSSAA 120
121 DYMQRKLAYF GSTLAAPLDM RRCTSNDSDC DSPP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [155-249] |
1 11 21 31 41 51
| | | | | |
1 PLSSSPSESP LSHDGSGLSR KKRSRAAFSH AQVFELERRF AQQRYLSGPE RSEMAKSLRL 60
61 TETQVKIWFQ NRRYKTKRKQ IQQHEAALLG ASKRV
|
| Detection Method: | |
| Confidence: | 20.30103 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.20302368446064 | bayes_pls_golite062009 |
| DNA binding | 3.910335137985 | bayes_pls_golite062009 |
| nucleic acid binding | 3.70444192553266 | bayes_pls_golite062009 |
| transcription factor activity | 3.41495638905535 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.0896307866191 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.72533206529661 | bayes_pls_golite062009 |
| transcription repressor activity | 1.55910796763122 | bayes_pls_golite062009 |
| transcription activator activity | 1.36535925881104 | bayes_pls_golite062009 |
| transcription factor binding | 1.05399367242529 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.7265140277161 | bayes_pls_golite062009 |
| chromatin binding | 0.572427333286789 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.49703800163515 | bayes_pls_golite062009 |
|
Region A: Residues: [250-382] |
1 11 21 31 41 51
| | | | | |
1 PVQVLVREDG STTYAHMAAP GAGHGLDPAL INIYRHQLQL AYGGLPLPQM QMPFPYFYPQ 60
61 HKVPQPIPPP TQSSSFVTAS SASSSPVPIP IPGAVRPQRT PCPSPNGQMM SVESGAESVH 120
121 SAAEDVDENV EID
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
