| Protein: | trem-PA |
| Organism: | Drosophila melanogaster |
| Length: | 439 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trem-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
658.0 | [0..3] | [438..2430] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MKTESNEKWV VCRVCLNNPS EGEELLHDIF SETASTRLDQ MLHICAGIPV SLDDNFPDKM 60
61 CSKCVRCLRL CYKFRLTCQR SHQHIMDMLD REASNANAAG EGDLLSIAED LSV
|
| Detection Method: |  |
| Confidence: | 3.08 |
| Match: | 1pzwA |
| Description: | Crystal structure of the zinc finger associated domain of the Drosophila transcription factor Grauzone |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.27558039325716 | bayes_pls_golite062009 |
| transcription regulator activity | 2.04365369058994 | bayes_pls_golite062009 |
| DNA binding | 2.03081693058447 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91890460542409 | bayes_pls_golite062009 |
| protein binding | 1.64123046790677 | bayes_pls_golite062009 |
| transcription factor activity | 1.28005240080126 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.531420912328414 | bayes_pls_golite062009 |
| transcription activator activity | 0.448420149095895 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.338250967854476 | bayes_pls_golite062009 |
| transcription factor binding | 0.25088296722645 | bayes_pls_golite062009 |
| catalytic activity | 0.133319360419662 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 0.0760964730095472 | bayes_pls_golite062009 |
|
Region A: Residues: [114-204] |
1 11 21 31 41 51
| | | | | |
1 ESVLKSWEDY ASQLDGGMKV EGEEDQQHQV ITYVVEDGDT DDTNMFDVHD PTQPVPNEIE 60
61 EAETYAEYEE YELLTNENSP EIAQEKGSTG T
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [205-439] |
1 11 21 31 41 51
| | | | | |
1 DVATEEPPEE EIAEDILDSD EDYDPTHAKP EKCDRSGRKP VAYHKNSPKV ETFKKKVGRK 60
61 PRNKLSTYIC DVCGNIYPTQ ARLTEHMKFH SGVKPHECEI CGRGFVQNQQ LVRHMNTHTG 120
121 NRPYKCNYCP AAFADRSTKT KHHRIHTKER PYVCDVCSRT FTYSDNLKFH KMIHTGEKPH 180
181 VCDLCGKGFV KAYKLRLHRE THNRRITWRN DAEESTKAED VKGETPEFLN ELPKE
|
| Detection Method: | |
| Confidence: | 61.09691 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
