| Protein: | ss-PA |
| Organism: | Drosophila melanogaster |
| Length: | 884 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ss-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
429.0 | [0..1] | [884..1] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MSQLGTVYAT KRRRRNGKSL KPPPKDGVTK SNPSKRHRER LNAELDLLAS LLPFEQNILS 60
61 KLDRLSILRL SVSYLRTKSY FQVVMHKDKE DNGVLPHIHA HDGYRTRELG A
|
| Detection Method: |  |
| Confidence: | 5.0 |
| Match: | 1am9A |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.39500382187264 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription activator activity | 2.5495467409976 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.31910036997977 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.22731296211498 | bayes_pls_golite062009 |
| protein binding | 1.59929864805879 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| transcription repressor activity | 0.955588849035129 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.801830750183111 | bayes_pls_golite062009 |
| promoter binding | 0.68523657427264 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
|
Region A: Residues: [112-477] |
1 11 21 31 41 51
| | | | | |
1 FEHGLLDGDM FLQALNGFLM ILTCEGEVFF ATHSIESYLG FHQSDIVHQS VYELVHSEDR 60
61 EELQRQLLWN SFLPADMSSM QLAETLAPDK ALYLERSFTV RFRCLLDNTS GFLRLDIRGR 120
121 IKVLHGQNRK TEEPPLALFA YCTPFGPPSL LEIPHKENMF KSKHKLDFSL VSMDQRGKHI 180
181 LGYADAELVN MGGYDLVHYD DLAYVASAHQ ELLKTGASGM IAYRYQKKDG EWQWLQTSSR 240
241 LVYKNSKPDF VICTHRQLMD EEGHDLLGKR TMDFKVSYLD TGLASTYFSE ADQLVVPPST 300
301 SPTAHALPPP VTPTRPNRRY KTQLRDFLST CRSKRKLQQQ NQPQTQQTSP LGGQVGSPAP 360
361 AVAVEY
|
| Detection Method: | |
| Confidence: | 56.0 |
| Match: | 1wa9A |
| Description: | Crystal Structure of the PAS repeat region of the Drosophila clock protein PERIOD |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [478-661] |
1 11 21 31 41 51
| | | | | |
1 LPDPAAAVAA AYSNLNPMYT TSPYASAADN LYMGSSMPAN AFYPVSENLF HQYRLQGAVG 60
61 GYYTDYPHSG APASAYVANG FLSYDGYAIA SKADEKWQET GKYYSGYSSG YGSPTSTPQV 120
121 RKQIPLKTPK SSPQVMEVIS CSSDGPSPVG GATPNGVGSV TPKVELAGTT AAAAAGQDPY 180
181 ERQT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [662-884] |
1 11 21 31 41 51
| | | | | |
1 VLMWGTTHSS GVPLNSHGGR TGAGNPASPQ RSTPLGNGLG YASANNNNND LEPATAAKWN 60
61 GTKELPGKSG SASTPESYQM QHDDSGLYSA SSHTTSPQQQ QQQQLQQSQR GVGSNVSAPS 120
121 SSLTSTGTDQ QAVHPSSCHQ QQQQQQQQHH HAHPHPHSHH HHHHHHHHET AHQHSSEVWT 180
181 PASYTQYSQY FTYHHPHPHP HHPSAGGGGH VPAQSHHLHH GHR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
