| Protein: | GATAe-PA |
| Organism: | Drosophila melanogaster |
| Length: | 746 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATAe-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
246.0 | [0..5] | [745..1151] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MVCKTISPSV NMQLKMEQQT TQQQQQQQQQ QQQQQQLQQQ QHQALTKQQL QLLDKIKLES 60
61 SNGADQLAQQ TANNLDEQQE QQQQHQQQAA TSVGVVVQTG QAGVSEPEEQ YVVVPRNQRR 120
121 ILTTAGTLEL NEARE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [136-259] |
1 11 21 31 41 51
| | | | | |
1 GEPSTNASNA SSGSASDSHI EYQRSAHQSP GATHYVQMAP RNAEVTEQVG AAAGAPPGTI 60
61 FAYPIICNGD DVAAIKIETL EKGEATGESQ QQQQQLQQHQ HQQQQQCPTP NGASYGETIV 120
121 ISSE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [260-359] |
1 11 21 31 41 51
| | | | | |
1 AEALQHHHQQ QQQHQQQQHQ QQHHQHQAAA AASAAAQTVH IATSSHGGTV RFVTEDVRFT 60
61 TAGPETSASN MYYDVPVVDG SVHANESKTY ADLGNAYAPF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [360-530] |
1 11 21 31 41 51
| | | | | |
1 PPSSSFSSNS YAATLQQGNT IYSVPGTGQF LAKSESGLNQ TGLLRQTGPA TFQTISFEGG 60
61 NGIEPLWASP APPEYQSVQF SNFHPQVIDE YGSGNMSTSH WPPASSIGQY DGSLVTASST 120
121 SSPNHELKCE NCHGPFLRKG SEYFCPNCPA FMRMAPRITQ RQAKPKAAAA P
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [531-605] |
1 11 21 31 41 51
| | | | | |
1 NNRRNGVTCA NCQTNSTTLW RRNNEGNPVC NACGLYYKLH NMNRPLSMKK EGIQKRKRKP 60
61 KNNGGAPMHR APLPS
|
| Detection Method: | |
| Confidence: | 7.09691 |
| Match: | 2gatA |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.52732993750126 | bayes_pls_golite062009 |
| transcription regulator activity | 1.70015379754395 | bayes_pls_golite062009 |
| DNA binding | 1.65515523003574 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.50367193346192 | bayes_pls_golite062009 |
| protein binding | 1.41749048987708 | bayes_pls_golite062009 |
| nucleic acid binding | 1.36224073182023 | bayes_pls_golite062009 |
| transcription factor activity | 1.14669021380366 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.0340476173844 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.701499822197 | bayes_pls_golite062009 |
| transcription activator activity | 0.6614529953701 | bayes_pls_golite062009 |
| transcription factor binding | 0.20735798780397 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.10722537662857 | bayes_pls_golite062009 |
|
Region A: Residues: [606-746] |
1 11 21 31 41 51
| | | | | |
1 MSQGVNLMAN SPLYPSQVPV SMLNSQLNSQ QNSSPELHDM STTGQAGGQR VVSISLNATA 60
61 PPTPDGTLNM SARHHVTGES HSPYSQQSTP QSQSPHLPGT VPINRQIVQP VPTIESSRSS 120
121 NTELTPSVIT RTGLPERSSN N
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
