| Protein: | Fer3-PA |
| Organism: | Drosophila melanogaster |
| Length: | 195 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Fer3-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
126.0 | [0..7] | [191..4] |
|
|
119.0 | [0..7] | [194..4] |
|
|
119.0 | [0..6] | [188..16] |
|
|
118.0 | [0..7] | [192..4] |
|
|
117.0 | [0..7] | [192..4] |
|
|
117.0 | [0..7] | [174..4] |
|
|
117.0 | [0..3] | [180..24] |
|
|
116.0 | [0..7] | [192..4] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MQHPHPIDQP TYMPDVPFQP LWGQEAPPPP IVPYQELIAG FPCTDLSLWQ RSQVTPLVPQ 60
61 RPSTNGRANG SSSSSKKTR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [80-195] |
1 11 21 31 41 51
| | | | | |
1 RRVASMAQRR AANIRERRRM FNLNEAFDKL RRKVPTFAYE KRLSRIETLR LAITYIGFMA 60
61 ELLSGTPSNS HKSRSDVYGS MNGHHQAPPP AIHPHHLHPA AAYQRDFASP YNHSLS
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 1nkpA |
| Description: | Myc prot-oncogene protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| nucleic acid binding | 4.75270293029792 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription repressor activity | 2.58751248599889 | bayes_pls_golite062009 |
| transcription activator activity | 2.5495467409976 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.48787404513864 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.31910036997977 | bayes_pls_golite062009 |
| transcription corepressor activity | 2.03674713048499 | bayes_pls_golite062009 |
| protein binding | 1.59929864805879 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 1.46304579811572 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
