| Protein: | MBD-like-PA |
| Organism: | Drosophila melanogaster |
| Length: | 339 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD-like-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
360.0 | [0..9] | [339..1] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MQMNPSVTIE RKRVDCSVLP KGWQRDEVRK SGSSANNNAS SNNNSSATAS SNNNNNKVDV 60
61 FYYSPTGKRA EGKPQDIAIP DFQPGKMPHC ALPSPSISLY RCSAMPLPIA SGGGNGATSG 120
121 SAANALKRKF ARSQGGNAAG AAGAAPPAAT
|
| Detection Method: |  |
| Confidence: | 3.154902 |
| Match: | 1ub1A |
| Description: | Solution structure of the matrix attachment region-binding domain of chicken MeCP2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 4.42562920230852 | bayes_pls_golite062009 |
| nucleic acid binding | 4.33195028920652 | bayes_pls_golite062009 |
| transcription repressor activity | 3.19559870959168 | bayes_pls_golite062009 |
| binding | 3.0325775548747 | bayes_pls_golite062009 |
| transcription regulator activity | 2.97633361410339 | bayes_pls_golite062009 |
| transcription corepressor activity | 2.70291730403476 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.42722575436746 | bayes_pls_golite062009 |
| chromatin binding | 2.34423510884984 | bayes_pls_golite062009 |
| transcription factor activity | 2.27540830787547 | bayes_pls_golite062009 |
| transcription factor binding | 1.67549684739333 | bayes_pls_golite062009 |
| methyl-CpG binding | 1.57450928488239 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.53919976183276 | bayes_pls_golite062009 |
| protein binding | 1.48651016577672 | bayes_pls_golite062009 |
| unmethylated CpG binding | 0.81114420503862 | bayes_pls_golite062009 |
| RNA binding | 0.33612198087066 | bayes_pls_golite062009 |
| mRNA binding | 0.28477406293958 | bayes_pls_golite062009 |
|
Region A: Residues: [151-245] |
1 11 21 31 41 51
| | | | | |
1 ASSAATATAA SASPSTANRQ QQQIELSRAL RTDVSLVPPI RQTASIFKQP VTVIRNHKQD 60
61 PAKAKNEPKH GTREKPKQLF WEKRLERLRA CHDSG
|
| Detection Method: | |
| Confidence: | 3.031517 |
| Match: | PF01429.10 |
| Description: | No description for PF01429.10 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [246-339] |
1 11 21 31 41 51
| | | | | |
1 EELDDISLPK TIRTVGPNVN EQTVLQSVAT ALHMLNAGVH GQSSTKADLT KNAMAFMNPE 60
61 QPLMHAVIIS EDDIRKQEDR VGVARRKLQD ALKT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
