| Protein: | Dfd-PA |
| Organism: | Drosophila melanogaster |
| Length: | 586 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dfd-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
164.0 | [0..1] | [586..1] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MSSFLMGYPH APHHVQSPMS MGNGLDPKFP PLADDYHHYN GHYSMTASTG HMSGAVGGGA 60
61 GVGSVGGGGA GGMTGHPHSM HPADMVSDYM AHHHNPHSHS HSHTHSLPHH HSNSAISGHH 120
121 QASAGGYSSN YANATPPSHP HSHPHAHPHQ SLGYYVHHAP E
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-364] |
1 11 21 31 41 51
| | | | | |
1 FISAGAVHSD PTNGYGPAAN VPNTSNGGGG GGSGAVLGGG AVGGSANGYY GGYGGGYGTA 60
61 NGSVGSTHSQ GHSPHSQMMD LPLQCSSTEP PTNTALGLQE LGLKLEKRIE EAVPAGQQLQ 120
121 ELGMRLRCDD MGSENDDMSE EDRLMLDRSP DELGSNDNDD DLGDSDSDED LMAETTDGER 180
181 IIYPWMKKIH VAGVANGSYQ PGM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [365-441] |
1 11 21 31 41 51
| | | | | |
1 EPKRQRTAYT RHQILELEKE FHYNRYLTRR RRIEIAHTLV LSERQIKIWF QNRRMKWKKD 60
61 NKLPNTKNVR KKTVDAN
|
| Detection Method: | |
| Confidence: | 21.522879 |
| Match: | 1homA |
| Description: | DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.20302368446064 | bayes_pls_golite062009 |
| DNA binding | 3.910335137985 | bayes_pls_golite062009 |
| nucleic acid binding | 3.70444192553266 | bayes_pls_golite062009 |
| transcription factor activity | 3.41495638905535 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.0896307866191 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.72533206529661 | bayes_pls_golite062009 |
| transcription repressor activity | 1.55910796763122 | bayes_pls_golite062009 |
| transcription activator activity | 1.36535925881104 | bayes_pls_golite062009 |
| transcription factor binding | 1.05399367242529 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.7265140277161 | bayes_pls_golite062009 |
| chromatin binding | 0.572427333286789 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.49703800163515 | bayes_pls_golite062009 |
|
Region A: Residues: [442-586] |
1 11 21 31 41 51
| | | | | |
1 GNPTPVAKKP TKRAASKKQQ QAQQQQQSQQ QQTQQTPVMN ECIRSDSLES IGDVSSSLGN 60
61 PPYIPAAPET TSSYPGSQQH LSNNNNNGSG NNNNNNNNNN SNLNNNNNNN QMGHTNLHGH 120
121 LQQQQSDLMT NLQLHIKQDY DLTAL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
