| Protein: | CG14641-PA |
| Organism: | Drosophila melanogaster |
| Length: | 418 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14641-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
356.0 | [0..1] | [416..1] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MSMSKTTNTY NRQNWEDAEF PILCQTCLGD NPYVRMIKER FGKECKICTR PFTIFRWCPG 60
61 ARMRFKKTEI CQTCARLKNV CQTCLLDLEY GL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [93-205] |
1 11 21 31 41 51
| | | | | |
1 PIQVRDAALK VADNMPQSDV NKEYYIQNID AQLQDGDGTE AAGAVGRSLA ANEMLSKLAR 60
61 TAPYYKRNRP HICSFWVKGE CKRGEECPYR HDKPNEPDDP LCEQNIKDRY YGR
|
| Detection Method: | |
| Confidence: | 11.522879 |
| Match: | 1x4bA |
| Description: | Solution structure of RRM domain in Heterogeneous nuclear ribonucleaoproteins A2/B1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [206-306] |
1 11 21 31 41 51
| | | | | |
1 NDPVAEKIMK RAASLPTLEP PEDRNITTLY VGNLPEEITE PELRDQFYQF GEIRSIALVP 60
61 RQQCAFVQYT KRNAAELAAE RTFNKLVIQG RKVSIKWAHS Q
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 2ytcA |
| Description: | No description for 2ytcA was found. |
|
Region A: Residues: [307-418] |
1 11 21 31 41 51
| | | | | |
1 AKQGTAAKTD RRFDLAGIPP PSAKPNDYFN LRQEQINVMP AGMKLHQLPS NLVPASAYQM 60
61 YGQPTYAAPY GNATSTALSS SGVNLDSISI PPPPGQVPYP SQDASRMGAV KK
|
| Detection Method: | |
| Confidence: | 4.154902 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
