| Protein: | Rpn12-PA |
| Organism: | Drosophila melanogaster |
| Length: | 264 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rpn12-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
269.0 | [0..7] | [264..97] |
|
|
266.0 | [0..1] | [264..5] |
|
|
265.0 | [0..7] | [264..95] |
|
|
262.0 | [0..7] | [264..33] |
|
Region A: Residues: [1-264] |
1 11 21 31 41 51
| | | | | |
1 MANVESLYKE LTAEWSKRPP NTVKCGQLLD QLKVALVKMA FLPTDGNDAQ SSKKQLILAR 60
61 SVLEVAVEHS VLSKDLLAFE RYMAQLKCYY YDYAKIIGES ESKYKLLGLN LLYLLSGNRV 120
121 SDFHTELELL SVDVIQHNQF IRPILALEQY IMEGRYNKIF QAKSTVPVEV YSYFMDLLLE 180
181 TVRDEIGACI EKSYDKISAK DAAKRLNLRV PDEIKAFGAK RQWKLEASGD YSFTDRSVKP 240
241 KELLPSEELA EQVLSYARDL EMIV
|
| Detection Method: |  |
| Confidence: | 2.08 |
| Match: | 1rz4A |
| Description: | Crystal Structure of Human eIF3k |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.76236644111948 | bayes_pls_golite062009 |
| hydrolase activity | 2.62777210765927 | bayes_pls_golite062009 |
| protein binding | 1.5114863464349 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.48815906385664 | bayes_pls_golite062009 |
| nucleic acid binding | 1.08079130332447 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.06350696248374 | bayes_pls_golite062009 |
| transcription repressor activity | 0.700922242779288 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.37240198519167 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.224432853777564 | bayes_pls_golite062009 |
| DNA binding | 0.180353635969032 | bayes_pls_golite062009 |
| transcription regulator activity | 0.147335771550418 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.142921675412538 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.124542865343065 | bayes_pls_golite062009 |
