YRC Public Data Repository - Protein Structure Prediction

Protein:	Nelf-E-PA
Organism:	Drosophila melanogaster
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nelf-E-PA.

Description	E-value	Query Range	Subject Range
gi\|73974162 - gi\|73974162\|ref\|XP_857372.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	172.0	[0..1]	[275..13]
PABP4_ARATH - Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1	166.0	[0..1]	[275..136]
gi\|76633747 - gi\|76633747\|ref\|XP_881817.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	165.0	[0..1]	[278..13]
gi\|13560783 - gi\|13560783\|gb\|AAK30205.1\|AF349964_1 poly(A)-binding protein [Daucus carota]	163.0	[0..2]	[273..131]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYIHFPNNL TEEEQMLQAK YQKLKKKKKA LQAHKAPKPE PESSLTLKRP TDARDAREVA  60
   61 RKLIKSGAIP AIQKQTKQDQ TSFKRPKGQE RAKRSTSETT VASYQPFSST QNDVAQETII 120
  121 SEIIKEEPRR QNLYQHFATE RDREERGMPE KVPMDTAQPE KPRAGNTIFV SGNKVTEDFL 180
  181 KKTFNDYGTI VNVSMEIEKS RGFVSFAKPE SADRAIAEIH GKNVNGINLQ VQLARRQPQI 240
  241 EPINDASSSA VWSSIAASKS QKGSHKDHRE MVQYDEDFLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2ghpA
Description:	No description for 2ghpA was found.

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	4.92126426323641	bayes_pls_golite062009
binding	3.64400841800969	bayes_pls_golite062009
RNA binding	2.92438188845619	bayes_pls_golite062009
transcription regulator activity	2.18211199677674	bayes_pls_golite062009
DNA binding	1.98418556946403	bayes_pls_golite062009
mRNA binding	1.94495589345842	bayes_pls_golite062009
transcription repressor activity	1.25394600300835	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.1920664543285	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
transcription factor activity	1.07843408116687	bayes_pls_golite062009
	0.84116054461637	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.632534695085793	bayes_pls_golite062009
sequence-specific DNA binding	0.383589644462932	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: