| Protein: | TfIIEbeta-PA |
| Organism: | Drosophila melanogaster |
| Length: | 292 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TfIIEbeta-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
352.0 | [0..1] | [286..1] |
|
|
351.0 | [0..1] | [286..122] |
|
|
349.0 | [0..1] | [286..1] |
|
|
347.0 | [0..1] | [286..1] |
|
|
347.0 | [0..1] | [286..1] |
|
|
346.0 | [0..1] | [286..1] |
|
|
345.0 | [0..1] | [286..1] |
|
|
345.0 | [0..1] | [286..1] |
|
Region A: Residues: [1-153] |
1 11 21 31 41 51
| | | | | |
1 MDPALLRERE AFKKRAMATP TVEKKSKPDR PAPPPPSDDS RRKMRPPNAP RLDATTYKTM 60
61 SGSSQYRFGV LAKIVKFMRT RHQDGDDHPL TIDEILDETN QLDIGQSVKN WLASEALHNN 120
121 PKVEASPCGT KFSFKPVYKI KDGKTLMRLL KQH
|
| Detection Method: |  |
| Confidence: | 28.69897 |
| Match: | 1d8jA |
| Description: | The central core domain of TFIIE beta |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.67074370996647 | bayes_pls_golite062009 |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 4.84466441605416 | bayes_pls_golite062009 |
| nucleic acid binding | 4.57954522145536 | bayes_pls_golite062009 |
| transcription factor activity | 4.12685284895733 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.3918869755162 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.81270943531115 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.237727660028553 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.13524243942225 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0360186926687502 | bayes_pls_golite062009 |
|
Region A: Residues: [154-292] |
1 11 21 31 41 51
| | | | | |
1 DLKGLGGILL DDVQESLPHC EKVLKNRSAE ILFVVRPIDK KKILFYNDRT ANFSVDDEFQ 60
61 KLWRSATVDA MDDAKIDEYL EKQGIRSMQD HGLKKAIPKR KKAANKKRQF KKPRDNEHLA 120
121 DVLEVYEDNT LTLKGVNPT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
