| Protein: | NC2alpha-PA |
| Organism: | Drosophila melanogaster |
| Length: | 341 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NC2alpha-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
169.0 | [0..1] | [341..1] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MPSKKKKYNA RFPAGRIKKI MQSDEEIGKV AQAVPVIISR TLELFVESLL TKTLRITNAR 60
61 NAKTLSPSHM RQCIVSEKRF DFLKELVRNI PD
|
| Detection Method: |  |
| Confidence: | 22.221849 |
| Match: | 1jfiA |
| Description: | Negative cofactor 2, NC2, alpha chain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.43582244485566 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.28941584139552 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| transcription repressor activity | 2.3574713307436 | bayes_pls_golite062009 |
| transcription initiation factor activity | 1.57176056919918 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.30859203490073 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
|
Region A: Residues: [93-280] |
1 11 21 31 41 51
| | | | | |
1 ISVAEEAAYN EDDVLRSSPE EQYPDSDTPY DLSLPSTSMR SQANGTAAYM RSMSLNNGAG 60
61 SGGGAAATKR QFQSQHSTQE TPTTSTTLPA KLARSGSMPA YTPRGRPPNH LKKQSVQLDT 120
121 AIPAPICNYE LNKPIVKIDY SHVQMPTANL CTPDASDSGS GSGAGSGAFN FDIAAPVINI 180
181 DLTNIVAG
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [281-341] |
1 11 21 31 41 51
| | | | | |
1 GAPGSGVPPA SIGLPAATPG DNNNVNQMAG KSSAPIIPKA TAASATPTET VFELDEDYDN 60
61 I
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
