| Protein: | rib-PA, FBpp0303090 |
| Organism: | Drosophila melanogaster |
| Length: | 661 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rib-PA, FBpp0303090.
| Description | E-value | Query Range |
Subject Range |
|
|
194.0 | [0..2] | [315..13] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MGGPTAPVAS SGEVGQTYCL RWNNHQTNLV QILHALHEVG SYVDCSLVVD DEQFQAHRVV 60
61 LAANSPYFQH ILKDVPQDHC SIILPGVKGF EIAALLQYMY TGETTVTKSQ EPEILRTAKE 120
121 LQVKGLYDNL MKFNHASVTP TSSSGAGGAK PQNGSASNHS SSVISTSTHI SPSAAISSSC 180
181 SPPPPPQFGY
|
| Detection Method: |  |
| Confidence: | 37.522879 |
| Match: | 2nn2A |
| Description: | No description for 2nn2A was found. |
|
Region A: Residues: [191-327] |
1 11 21 31 41 51
| | | | | |
1 QPGYSHYPQQ QPMSASQIPA GEAPLTPTQA TPHSAASGAG EAGGQWPLTP SAAAAMLNSV 60
61 YESAADMNPL KRKKLSAISS MLLSGNRDTP ILRNVLAQAN PADSSQPGPM NANGEKTPTH 120
121 PHQNTQLPAG LGVSGGE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [328-425] |
1 11 21 31 41 51
| | | | | |
1 RNHSFNGSDY GGDKEPLSPY TDRSFEEETG QSGGKKPEWK RYKQYTRADM MCAIQAVREG 60
61 MSALQASRKY GLPSRTLYDK VRKLNITTGR GTHRTPKR
|
| Detection Method: | |
| Confidence: | 2.14 |
| Match: | 2cobA |
| Description: | Solution structures of the HTH domain of human LCoR protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.86538715425734 | bayes_pls_golite062009 |
| DNA binding | 4.40186699787632 | bayes_pls_golite062009 |
| nucleic acid binding | 4.28652307290136 | bayes_pls_golite062009 |
| transcription factor activity | 3.78935192723648 | bayes_pls_golite062009 |
| transcription repressor activity | 3.3280771187468 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25454589469681 | bayes_pls_golite062009 |
| transcription activator activity | 2.92652250400688 | bayes_pls_golite062009 |
| binding | 2.92574888336072 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.91588376840709 | bayes_pls_golite062009 |
| protein binding | 1.84594855626241 | bayes_pls_golite062009 |
| chromatin binding | 1.46954724788757 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.44773725829085 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.30723796612579 | bayes_pls_golite062009 |
| transcription factor binding | 1.24678737091956 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.691780246385357 | bayes_pls_golite062009 |
|
Region A: Residues: [426-527] |
1 11 21 31 41 51
| | | | | |
1 SPPGAESSQG FSYSAAAAAA AHNYGHGHGH HSEVKRDQKV DHVPAHHGMP PTIPPSAAAL 60
61 LDHAFLQQAL ENRGGDMAGR EALHAMALAA AAHAAANRLS SS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [528-661] |
1 11 21 31 41 51
| | | | | |
1 PAEMDQRSNG HGMRSPSPQG RHYPHEQEAM DLEMEKHEQN IIKRERDQDE REDADDEEDH 60
61 EQEHVEDLSL ARKERPPSPY SPQPTEAGAG VIMHASSASA NGKDHVDYPS SPQFVPIGLK 120
121 RELMEGEDAQ ARAD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
