YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: l(2)k01209-PC, l...
Organism: Drosophila melanogaster
Length: 626 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(2)k01209-PC, l....

Description E-value Query
Range
Subject
Range
l(2)k01209-PA - The gene lethal (2) k01209 is referred to in FlyBase by the symbol Dmel\l(2)k01209 (CG4798, FBgn0022...
452.0 [0..95] [626..30]

Back

Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSITFLCSK SGHNTNNNSI NSSNNDVPKG AKANSAFAAA SAGLLTIANH QQQQLLQQPH  60
   61 QQQQQQQQQH HQQSKVKAIA AKTNGHIDDR SLSDVTEQLY VDPYADLSNG LPGDLNCCPA 120
  121 SPTTVPAKAS LDSPLKRSGR RQRTTSIGNQ TTTANPSECI IRANNRTIYT AGRPPWYNCA 180
  181 GQQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [184-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEPFVIGICG GSASGKTTVA EKIIESLDVP WVTLLSMDCF YKILNEKQHE QALINEYNFD  60
   61 HPDAFDIELL LDVLTKLKEG RKVEVPVYNF VTHGRESQTK TMYGANVIIF EGILTFHSPE 120
  121 VLKLLDMKIF VDTDPDIRLA RRLRRDISQR GRDLKGVLKQ YLNMVKPSYC NYIAPTMAHA 180
  181 DIIVPRGGDN KVAIHLIVQH VHTQLQLRGF KLRETLANSY KDQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.522879
Match: 2jeoA
Description: No description for 2jeoA was found.

Predicted Domain #3
Region A:
Residues: [408-626]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHSLHLLHP TPQIKGLHTF IRCRNTSRDE FIFYSKRLIR LVIEYALSLF PFKKTTVETP  60
   61 QGVLYEGKRM ESRKICGVSI LRAGETMEQA VCDVCKDIRI GKILIQTNLK TGEPELYYLR 120
  121 LPKDIKDYKV ILMDATVATG AAAMMAIRVL LDHDVPEDNI ILASLLMAEI GVHSIAYAFP 180
  181 KVKIVTSALD PEINSKFYVI PGIGNFGDRY FGTEPSDEY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.69897
Match: 1bd3D
Description: Uracil PRTase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
uracil phosphoribosyltransferase activity 3.97944228585882 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 3.91023158228049 bayes_pls_golite062009
adenine phosphoribosyltransferase activity 3.07502596276449 bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity 2.97347277288245 bayes_pls_golite062009
transferase activity 2.73727660668741 bayes_pls_golite062009
transferase activity, transferring pentosyl groups 2.53679639481311 bayes_pls_golite062009
catalytic activity 2.30431811394775 bayes_pls_golite062009
nucleobase binding 1.70525606708275 bayes_pls_golite062009
purine binding 1.24786927434743 bayes_pls_golite062009
ribose phosphate diphosphokinase activity 0.947697983706416 bayes_pls_golite062009
binding 0.847513071499147 bayes_pls_golite062009
diphosphotransferase activity 0.749909396904601 bayes_pls_golite062009
nucleic acid binding 0.552133387792911 bayes_pls_golite062009
DNA binding 0.439741935655503 bayes_pls_golite062009
transcription regulator activity 0.396538943915776 bayes_pls_golite062009
amidophosphoribosyltransferase activity 0.360901350940423 bayes_pls_golite062009
orotate phosphoribosyltransferase activity 0.148898393751978 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle