| Protein: | cid-PA |
| Organism: | Drosophila melanogaster |
| Length: | 225 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cid-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
253.0 | [0..1] | [225..1] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MPRHSRAKRA PRPSANNSKS PNDDDTAFRS PEPEDGTDYG LEFTTSQLTL QDNNRRSSTL 60
61 RRDAGRRQPA ARDSSTSGEE EDQENRY
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [88-225] |
1 11 21 31 41 51
| | | | | |
1 PTTRSPQTRR MTVQQESKTR AAGPVAAQNQ TRRRKAANPM SRAKRMDREI RRLQHHPGTL 60
61 IPKLPFSRLV REFIVKYSDD EPLRVTEGAL LAMQESCEMY LTQRLADSYM LTKHRNRVTL 120
121 EVRDMALMAY ICDRGRQF
|
| Detection Method: | |
| Confidence: | 50.045757 |
| Match: | 1u35A |
| Description: | Crystal structure of the nucleosome core particle containing the histone domain of macroH2A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 3.77402874003635 | bayes_pls_golite062009 |
| binding | 3.12722734218139 | bayes_pls_golite062009 |
| centromeric DNA binding | 2.60445660474495 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.17470289921427 | bayes_pls_golite062009 |
| DNA binding | 1.81202026929492 | bayes_pls_golite062009 |
| nucleic acid binding | 1.77431079461635 | bayes_pls_golite062009 |
| transcription factor binding | 1.49909125565453 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.37016786211811 | bayes_pls_golite062009 |
| protein binding | 1.2861218811362 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07001118921201 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.483720456107869 | bayes_pls_golite062009 |
| transcription repressor activity | 0.38665562690801 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.322861678821436 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.322861678821436 | bayes_pls_golite062009 |
| histone binding | 0.218942897869955 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0581806902793005 | bayes_pls_golite062009 |
