| Protein: | Ndg-PA, FBpp0308545 |
| Organism: | Drosophila melanogaster |
| Length: | 1350 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ndg-PA, FBpp0308545.
| Description | E-value | Query Range |
Subject Range |
|
|
873.0 | [0..1] | [1350..1] |
|
Region A: Residues: [1-146] |
1 11 21 31 41 51
| | | | | |
1 MPTFGSKLLA CLLLSSVILV SGQFEHYLDS LRASELYEFE DGSLGSIHLL PKGDSETIVL 60
61 QLEQPIHFYG EQYEQLYINT NGILTFNSEF PEYLNQPFPL EYASIAAFYS NVDTSFSDEG 120
121 TSISLFESKE QSILDRASSL VRYAFS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [147-267] |
1 11 21 31 41 51
| | | | | |
1 SQSEFEARQV IVATWRNVGY FDSKTDRLNT FQVALIANEQ STFVQFIYPD GGLNWLQGET 60
61 AGLGLPDIRA QAGFVAEDGR FYTLNGSGSE NARFLSESTN LGVPGVWLFE VAPIENEQNV 120
121 R
|
| Detection Method: | |
| Confidence: | 18.537602 |
| Match: | PF06119.5 |
| Description: | No description for PF06119.5 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [268-543] |
1 11 21 31 41 51
| | | | | |
1 SPDNAESLTE SPALALSCQA HAHQCHEKAE CHDKAEGYCC VCGSGFYGNG KSCLANDQPI 60
61 RVTGTLTGEL NKQPVSEEAK LQSYVVTSEG RTYTTINPLT PELGAQLRLV LPLLTTVPWL 120
121 FAKSVGGVAN GYQLTGGVYT HVSRLQFDSG ENLHVNQTFE GLNYWDQLSV KIEIYGEVPA 180
181 VAADAVLILP DYVEEYTFER PGELKSVQVL NINITEEQRV LGLQVEQRIL YRSCLRDDEA 240
241 DPSATKVLQK ISKVALDYVE RDQALRIGAM SKVGVT
|
| Detection Method: | |
| Confidence: | 35.0 |
| Match: | 1gl4A |
| Description: | Domain G2 of nidogen-1; EGF-like domain of nidogen-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [544-638] |
1 11 21 31 41 51
| | | | | |
1 PESNACNDGT ADCVENSVCV PYEDTYRCDC YHGFAAQLDE RGVEVCLDID ECATGSHVCD 60
61 ENAVCDNTEG GFNCYCTEGF EGNGYRCLSN STADN
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1yo8A |
| Description: | Strucuture of the C-terminal domain of human thrombospondin-2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [639-1350] |
1 11 21 31 41 51
| | | | | |
1 IEYPPAVEGQ AEPTSEPSPN PSPYPDQGQD QEREREDDQY PQPNPYPYPE EQIPQHPDEC 60
61 YRCSKDADCY QGRCTCHEGF DGDGYTCTNI CGHGEVWENG RCEPLLLERH DVDPLCDALG 120
121 ECRCPYGYEL SEDSQRCTYV QEFDGERNAD LIPCDVDENC HINATCNWYG QELRHICTCQ 180
181 PGFRGDGYNC DPISDDSCAI RPDICDVHAD CVYEEHLGKS ECQCQAGYTG NGFNCQLAAE 240
241 CQSAEHCGEN AFCDDGVCRC QADFERDVSD RCVPAGRCGS VFCGSNAICK WDSAEGVQYC 300
301 DCLDGYQGDA LTGCTSKPLS CHVLNNCGIH ATCEPTEDPA NYECQCIAGF KGDGYVCIEE 360
361 QNCLNNPTLC DMNAQCRSTN SGLVCVCNQG FFGNGSLCQE RQHQDSDFLI VSQGVMIARV 420
421 PLNGRNVRPI SVAQMAIGLD KDCVEGRVYW GDISTKKIVS TKYDGTDLRP FITTDIESPE 480
481 GIAIDVISRR LYWADSAKDT IEVASLDDPS LRAVIINKQL VNPRGIAVDP YREKLFWSDW 540
541 DRESPKIEMS NLDGTGRELL LGKDDVTLPN SLVVLENSGE VCYADAGTKK VECIEPQNRQ 600
601 IRTISNELSY PFGITFTHDQ FYWTDWTTKK VEIVDSLGAR QTPIQPPFFG SHKMYGMTVV 660
661 EQHCPQYQSP CQISNGGCTD SRLCLVNRQA PSGKSCKCTS ASTGCTVLAP GY
|
| Detection Method: | |
| Confidence: | 117.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor binding | 4.18507256704458 | bayes_pls_golite062009 |
| lipoprotein binding | 2.85368924610519 | bayes_pls_golite062009 |
| growth factor activity | 2.65714307626854 | bayes_pls_golite062009 |
| low-density lipoprotein binding | 2.54260987806255 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 2.52206476012132 | bayes_pls_golite062009 |
| protein binding | 2.39474188157708 | bayes_pls_golite062009 |
| binding | 2.23348590722752 | bayes_pls_golite062009 |
| polysaccharide binding | 1.95292425479529 | bayes_pls_golite062009 |
| receptor activity | 1.78685457669149 | bayes_pls_golite062009 |
| pattern binding | 1.70736389292491 | bayes_pls_golite062009 |
| heparin binding | 1.62255185635992 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 1.60646803688398 | bayes_pls_golite062009 |
| collagen binding | 1.3611207932336 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.3592722174781 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 1.27162188822674 | bayes_pls_golite062009 |
| carbohydrate binding | 1.17408158237797 | bayes_pls_golite062009 |
| lipoprotein receptor activity | 0.876048180035911 | bayes_pls_golite062009 |
| extracellular matrix binding | 0.3265100728106 | bayes_pls_golite062009 |
| glycoprotein binding | 0.230499048015879 | bayes_pls_golite062009 |
| low-density lipoprotein receptor activity | 0.103819681297094 | bayes_pls_golite062009 |
