| Protein: | trpl-PD, trpl-PB... |
| Organism: | Drosophila melanogaster |
| Length: | 1124 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trpl-PD, trpl-PB....
| Description | E-value | Query Range |
Subject Range |
|
|
654.0 | [0..48] | [1124..48] |
|
Region A: Residues: [1-361] |
1 11 21 31 41 51
| | | | | |
1 MGRKKKLPTG VSSGVSHASS APKSVGGCCV PLGLPQPLLL EEKKFLLAVE RGDMPNVRRI 60
61 LQKALRHQHI NINCMDPLGR RALTLAIDNE NLEMVELLVV MGVETKDALL HAINAEFVEA 120
121 VELLLEHEEL IYKEGEPYSW QKVDINTAMF APDITPLMLA AHKNNFEILR ILLDRGAAVP 180
181 VPHDIRCGCE ECVRLTAEDS LRHSLSRVNI YRALCSPSLI CLTSNDPIIT AFQLSWELRN 240
241 LALTEQECKS EYMDLRRQCQ KFAVDLLDQT RTSNELAIIL NYDPQMSSYE PGDRMSLTRL 300
301 VQAISYKQKK FVAHSNIQQL LSSIWYDGLP GFRRKSIVDK VICIAQVAVL FPLYCLIYMC 360
361 A
|
| Detection Method: |  |
| Confidence: | 57.69897 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| metal ion transmembrane transporter activity | 3.06689459321273 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.89029061890648 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.66479899929908 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.59441577402651 | bayes_pls_golite062009 |
| calcium channel activity | 2.42383730626707 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 2.39688396372487 | bayes_pls_golite062009 |
| channel activity | 2.39688396372487 | bayes_pls_golite062009 |
| cation channel activity | 2.37772481426745 | bayes_pls_golite062009 |
| ion channel activity | 2.36752848265558 | bayes_pls_golite062009 |
| substrate-specific channel activity | 2.26531840012081 | bayes_pls_golite062009 |
| binding | 1.96927469603571 | bayes_pls_golite062009 |
| gated channel activity | 1.75472864911207 | bayes_pls_golite062009 |
| molecular transducer activity | 1.68903441797843 | bayes_pls_golite062009 |
| signal transducer activity | 1.68903441797843 | bayes_pls_golite062009 |
| structural constituent of muscle | 1.64895183402675 | bayes_pls_golite062009 |
| protein binding | 1.64872738860757 | bayes_pls_golite062009 |
| transporter activity | 1.19000052859754 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.02570255606772 | bayes_pls_golite062009 |
| receptor activity | 0.976205440274192 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.835937200249181 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.797192905752426 | bayes_pls_golite062009 |
| mechanically gated channel activity | 0.645199153849127 | bayes_pls_golite062009 |
| mechanically-gated ion channel activity | 0.645199153849127 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.45950244714772 | bayes_pls_golite062009 |
|
Region A: Residues: [362-766] |
1 11 21 31 41 51
| | | | | |
1 PNCRTGQLMR KPFMKFLIHA SSYLFFLFIL ILVSQRADDD FVRIFGTTRM KKELAEQELR 60
61 QRGQTPSKLE LIVVMYVIGF VWEEVQEIFA VGMKSYLRNM WNFIDFLRNS LYVSVMCLRA 120
121 FAYIQQATEI ARDPQMAYIP REKWHDFDPQ LIAEGLFAAA NVFSALKLVH LFSINPHLGP 180
181 LQISLGRMVI DIVKFFFIYT LVLFAFACGL NQLLWYFAAL EKSKCYVLPG GEADWGSHGD 240
241 SCMKWRRFGN LFESSQSLFW ASFGMVGLDD FELSGIKSYT RFWGLLMFGS YSVINVIVLL 300
301 NLLIAMMSNS YAMIDEHSDT EWKFARTKLW MSYFEDSATL PPPFNVLPSV KWVIRIFRKS 360
361 SKTIDRQRSK KRKEQEQFSE YDNIMRSLVW RYVAAMHRKF ENNPV
|
| Detection Method: | |
| Confidence: | 6.154902 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [767-990] |
1 11 21 31 41 51
| | | | | |
1 SEDDINEVKS EINTMRYEML EIFENSGMDV SSANKKERQP RPRRIKVWER RLMKGFQVAP 60
61 VQNGCELDAF GNVNGQGEMQ EIKVESIPSK PAKETAKERF QRVARTVLLQ STTHKWNVVL 120
121 RAAKDSQIGR CTKNERKSLQ NLGRAIEEAK RLIMLNPGCP SGRESPIRIE FEDEKTSTLL 180
181 ELLNQISAEI SDSEKPKIRP IWRPPLKTVP ARAMAANNTR SLTA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [991-1124] |
1 11 21 31 41 51
| | | | | |
1 PELKISRKSS PAPTPTPTPG VSHTALSQFR NRELPLCPSK LIANSAPSAP TAPPKKSAPT 60
61 APTPTYKPTT HAPFSVEGGN RENTRASDGV RSDNSNFDIH VVDLDEKGGH LGRDNVSDIS 120
121 SIASTSPQRP KHRN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
