| Protein: | mus205-PA |
| Organism: | Drosophila melanogaster |
| Length: | 2130 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mus205-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1224.0 | [0..1] | [2130..1] |
|
Region A: Residues: [1-251] |
1 11 21 31 41 51
| | | | | |
1 MAAAGEAIDG VYSVRLVIAD FYMEKPQFGM DPCYSELRGK EIKRVPVIRV FGGNSRGQKT 60
61 CMHVHGVFPY LYIPYDKKDF ESLERGILQM AMHLDKAINI SLGQGSSNAQ HVFKIQLVKG 120
121 IPFYGYHRVE HQFLKIYMFN PRFVRRAANL LQSGAILSKN FSPHESHVPY ILQFMIDYNL 180
181 YGMSYVHVPL EVLKFRRNHD DDVIPYANVK QAQLLDITTA KKVACSALEV DVSSNFILNR 240
241 FQLVAKSKSN H
|
| Detection Method: |  |
| Confidence: | 1.66 |
| Match: | 1q8iA |
| Description: | Crystal structure of ESCHERICHIA coli DNA Polymerase II |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [252-362] |
1 11 21 31 41 51
| | | | | |
1 TNPGIEAIWN DEKLRRQKLV EKHTDAGDEE KAEAVPVLEL PPTQERHQIE IAESDIFYRT 60
61 ALESKLMTLE QSTLSEQTLS DQTILPQATM QTTMPGTKAQ KRRFNLQKLL A
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [363-554] |
1 11 21 31 41 51
| | | | | |
1 NAVYPEECSQ DQQQLLVNAS FIQNHVTCGY SSSVSLSTSK DESDDLDETV VDEELILSLT 60
61 QPHGAIPHDA TLREEDLELL DALQLLEEQN ESESHVDLDS SLAPLSQHKK FELTPELLDK 120
121 ETAATAALFD EDVDSDEDAD QETRHDFSTV LDDVDELLLK LTQSQPAESK ELKASSKLPQ 180
181 IDGADDRLQR TP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [555-997] |
1 11 21 31 41 51
| | | | | |
1 IKSISSKSKS SPSKTPTTPI GQKSLPKSPR TPKTSAAKKY APLALTIGSS SSKKSNDEFA 60
61 GRPSNPRLSL QLDQGTGTGT LRPEISLRKK LAMSEMRRKS FEDSFVLLKN DCTPVRSTRR 120
121 STSNLDKTHI ICSLTPRDRN PGLSDMFETE DGKQLPPKKV VRKTRWSTRN QDIESLPKAG 180
181 CEIERPHRSE GSALDELKPR RSARHKVNSA NPDECSSEIQ TTGPRVTTTS LDRPQKKARL 240
241 SQSPKENTKT SMNGTVALEK ATKDSSSNSE SPHQQENSVS EQIEYLESKP KKSDETARSC 300
301 DEKLQRELIP QEPAGISPGD SANSTEEITF SPCHDEAIES DTESDYIVTK LRKTPNLKRL 360
361 RWSIRSELLN KQFTPSSGIR PPETETTPQL SPKSNESNTP ELMRSFYEHS LIVNSPSVFS 420
421 DFLDSPEIHM DSPRSAPPSP DSN
|
| Detection Method: | |
| Confidence: | 1.24 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [998-1159] |
1 11 21 31 41 51
| | | | | |
1 SFVIAPLELP PSYDEVVSGS RKMDIPEYEF QKPYYSNPSD VSKVTEVGFL VLHIPGNKLN 60
61 DCDPFQSILG NDRGLASWRR RQLIAIGGLA MLQRHRGEQK VREYFSTQQR IAIEPAQLAP 120
121 TWQEAKIWLK AKELLRQREE PKKSSDDIDS PIKIKRQKIT MM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1160-2019] |
1 11 21 31 41 51
| | | | | |
1 LQAEEGDGGS GDEDAGEELD CSLSLTPLSQ AKDKCKATPT SSKARETGKS RLKRGTRLSF 60
61 IGSQDEEPPS SQSSEQSVSS SAAQAELDRS SFLRQLEGSS QDRQHDLSFG LSHATLDNTF 120
121 GFKVNLENLQ QAKADIDCNH LTIITLEVFV STRGDLQPDP MHDEIRCLFY AIEHSLPDEK 180
181 LPSKACGYIM VNTVQDLLSE GPFHGIDRDI EVQVVTSEAE AFEALLALCE RWDADIYAGY 240
241 EIEMSSWGYV IDRAKHLCFN IAPLLSRVPT QKVRDFVDED REQFTDLDVE MKLCGRILLD 300
301 VWRLMRSEIA LTSYTFENVM YHILHKRCPW HTAKSLTEWF GSPCTRWIVM EYYLERVRGT 360
361 LTLLDQLDLL GRTSEMAKLI GIQFYEVLSR GSQFRVESMM LRIAKPKNLV PLSPSVQARA 420
421 HMRAPEYLAL IMEPQSRFYA DPLIVLDFQS LYPSMIIAYN YCFSTCLGRV EHLGGSSPFE 480
481 FGASQLRVSR QMLQKLLEHD LVTVSPCGVV FVKREVREGI LPRMLTEILD TRQMVKQSMK 540
541 LHKDSSALQR ILHSRQLGLK LMANVTYGYT AANFSGRMPS VEVGDSVVSK GRETLERAIK 600
601 LVENNEEWKV RVVYGDTDSM FVLVPGRNRA EAFRIGEEIA KAVTEMNPQP VKLKLEKVYQ 660
661 PCMLQTKKRY VGYMYETADQ EQPVYEAKGI ETVRRDGCPA VAKMLEKVLR ILFETQDVSK 720
721 IKAYVCRQFT KLLSGRANLQ DLIFAKEFRG LNGYKPTACV PALELTRKWM QKDPRHVPRR 780
781 GERVPFIIVN GPPGMQLIRL VRSPHDILAN EGHKINAIYY ITKAIIPPLN RCLLLIGANV 840
841 HDWFASLPRK LLMTPAVGTA
|
| Detection Method: | |
| Confidence: | 173.0 |
| Match: | 1tgoA |
| Description: | Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed DNA polymerase activity | 11.2781960093187 | bayes_pls_golite062009 |
| DNA polymerase activity | 11.2285838712952 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 8.85826259809475 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.79232184185512 | bayes_pls_golite062009 |
| transferase activity | 4.02382113115178 | bayes_pls_golite062009 |
| DNA primase activity | 1.77742223999604 | bayes_pls_golite062009 |
| exonuclease activity | 1.42205333874102 | bayes_pls_golite062009 |
| ribonuclease activity | 1.41033617404868 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.16960098510532 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.16960098510532 | bayes_pls_golite062009 |
| catalytic activity | 1.04899053677564 | bayes_pls_golite062009 |
| nucleic acid binding | 0.959511000267266 | bayes_pls_golite062009 |
| endonuclease activity | 0.935348031740788 | bayes_pls_golite062009 |
| DNA binding | 0.86778938742546 | bayes_pls_golite062009 |
| binding | 0.808919229163124 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 0.48776342704945 | bayes_pls_golite062009 |
| damaged DNA binding | 0.39441061793492 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.14466215642144 | bayes_pls_golite062009 |
| transcription regulator activity | 0.126013788737514 | bayes_pls_golite062009 |
| protein binding | 0.101829155879905 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.0700154911930899 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.0662718964590603 | bayes_pls_golite062009 |
| nuclease activity | 0.0574785418962505 | bayes_pls_golite062009 |
|
Region A: Residues: [2020-2130] |
1 11 21 31 41 51
| | | | | |
1 NELAGARGAK STISQYFSTT SCVIDCGRQT KAGICPDCLK NATTCVVVLS DKTARLERGY 60
61 QLTRQICQAC CGRLGSLQCD SLDCPVLYVL EGKRRELQQI EHWNKLLEHH F
|
| Detection Method: | |
| Confidence: | 1.0 |
| Match: | 2cklB |
| Description: | No description for 2cklB was found. |
